RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 IGSF1Q8N6C5 1336 aa16.53■□□□□ 0.24
RAPGEF3-216ENST00000547856 KCNJ6P48051 423 aa16.53■□□□□ 0.24
RAPGEF3-216ENST00000547856 HSP90AA4PQ58FG1 418 aa16.53■□□□□ 0.24
RAPGEF3-216ENST00000547856 ANKRD20A12PQ8NF67 263 aa16.53■□□□□ 0.24
RAPGEF3-216ENST00000547856 ENGASEQ8NFI3 743 aa16.53■□□□□ 0.24
RAPGEF3-216ENST00000547856 LRRC2Q9BYS8 371 aa16.53■□□□□ 0.24
RAPGEF3-216ENST00000547856 IRX2Q9BZI1 471 aaPredicted RBP16.53■□□□□ 0.24
RAPGEF3-216ENST00000547856 CCDC151A5D8V7 595 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 SERPINC1P01008 464 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 RPS6KB1P23443 525 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 ADD1P35611 737 aaKnown RBP16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 LIG3P49916 1009 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 CFAP100Q494V2 611 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 HDXQ7Z353 690 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 PDILTQ8N807 584 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 SSH3Q8TE77 659 aa16.52■□□□□ 0.24
RAPGEF3-216ENST00000547856 ZSCAN12O43309 604 aa16.52■□□□□ 0.23
RAPGEF3-216ENST00000547856 PSME1Q06323 249 aa16.52■□□□□ 0.23
RAPGEF3-216ENST00000547856 JAKMIP3Q5VZ66 844 aa16.52■□□□□ 0.23
RAPGEF3-216ENST00000547856 CCDC12Q8WUD4 166 aaPredicted RBP16.52■□□□□ 0.23
RAPGEF3-216ENST00000547856 MPHOSPH8Q99549 860 aa16.52■□□□□ 0.23
RAPGEF3-216ENST00000547856 ABCB6Q9NP58 842 aa16.52■□□□□ 0.23
RAPGEF3-216ENST00000547856 GIGYF1O75420 1035 aaPredicted RBP16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 NMIQ13287 307 aaPredicted RBP16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 ANKRD1Q15327 319 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 BEND6Q5SZJ8 279 aaPredicted RBP16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 TADA2BQ86TJ2 420 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 ZNF622Q969S3 477 aaKnown RBP eCLIP16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 PNKPQ96T60 521 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 DESI2Q9BSY9 194 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 MKRN1Q9UHC7 482 aaKnown RBP16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 ANKARQ7Z5J8 1434 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 TMEM232C9JQI7 657 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 GLRX3O76003 335 aaKnown RBP16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 RHOXF2BP0C7M4 288 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 UBASH3AP57075 661 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 HSP90B2PQ58FF3 399 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 SUGP1Q8IWZ8 645 aaKnown RBP16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 RHOXF2Q9BQY4 288 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 RCOR1Q9UKL0 485 aa16.51■□□□□ 0.23
RAPGEF3-216ENST00000547856 NDUFA8P51970 172 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 TOGARAM2Q6ZUX3 1019 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 RBM33Q96EV2 1170 aaKnown RBP16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 RABEP2Q9H5N1 569 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 FAM204AQ9H8W3 233 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 EIF3JO75822 258 aaKnown RBP16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 TFRCP02786 760 aaKnown RBP16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 CHMP4BP1P59074 171 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 BRD3Q15059 726 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 EFCAB13Q8IY85 973 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 KAT2BQ92831 832 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 KIAA1468Q9P260 1216 aa16.5■□□□□ 0.23
RAPGEF3-216ENST00000547856 TRHP20396 242 aaPredicted RBP16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 HOXC9P31274 260 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 FBXW10Q5XX13 1052 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 MAP4K1Q92918 833 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 KCNB2Q92953 911 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 ANKZF1Q9H8Y5 726 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 RPS6KA5O75582 802 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 GSCP56915 257 aaPredicted RBP16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 NCAPHQ15003 741 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 ABTB2Q8N961 1025 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 SEC62Q99442 399 aaKnown RBP16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 DONSONQ9NYP3 566 aa16.49■□□□□ 0.23
RAPGEF3-216ENST00000547856 WDHD1O75717 1129 aaPredicted RBP16.48■□□□□ 0.23
RAPGEF3-216ENST00000547856 TOP1P11387 765 aaKnown RBP16.48■□□□□ 0.23
RAPGEF3-216ENST00000547856 ATP6V1AP38606 617 aa16.48■□□□□ 0.23
RAPGEF3-216ENST00000547856 PCDHA7Q9UN72 937 aa16.48■□□□□ 0.23
RAPGEF3-216ENST00000547856 ADGRL3Q9HAR2 1447 aa16.48■□□□□ 0.23
RAPGEF3-216ENST00000547856 SWT1Q5T5J6 900 aaKnown RBP16.48■□□□□ 0.23
RAPGEF3-216ENST00000547856 CNPY4Q8N129 248 aa16.48■□□□□ 0.23
RAPGEF3-216ENST00000547856 ERLIN2O94905 339 aa16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 NBPF7P0C2Y1 421 aaPredicted RBP16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 FMR1NBQ8N0W7 255 aaPredicted RBP16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 MRPS27Q92552 414 aaKnown RBP16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 KIFC2Q96AC6 838 aa16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 NWD1Q149M9 1564 aa16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 A0A0D9SFI3 127 aa16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 ADKP55263 362 aaKnown RBP16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 Q6ZUG5 572 aa16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 CLIC6Q96NY7 704 aa16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 LZTFL1Q9NQ48 299 aa16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 CHD2O14647 1828 aaKnown RBP16.47■□□□□ 0.23
RAPGEF3-216ENST00000547856 A0A087WUV0 522 aaPredicted RBP16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 MTX1Q13505 466 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 CASP8Q14790 479 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 SF3A1Q15459 793 aaKnown RBP16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 ERC1Q8IUD2 1116 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 LTV1Q96GA3 475 aaPredicted RBP16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 CEP89Q96ST8 783 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 L1RE1Q9UN81 338 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 PPFIA4O75335 1185 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 SLC3A2P08195 630 aaKnown RBP16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 TDO2P48775 406 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 BAG1Q99933 345 aaPredicted RBP16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 TAOK2Q9UL54 1235 aa16.46■□□□□ 0.23
RAPGEF3-216ENST00000547856 HNRNPH1P31943 449 aaKnown RBP16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 CCT2P78371 535 aaKnown RBP16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 SCRN1Q12765 414 aa16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 CLASRPQ8N2M8 674 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms