RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 HDGFL1Q5TGJ6 251 aa8.15□□□□□ -1.1
PRKDC-211ENST00000546304 TSPYL6Q8N831 410 aa8.15□□□□□ -1.1
PRKDC-211ENST00000546304 C8orf58Q8NAV2 365 aa8.15□□□□□ -1.1
PRKDC-211ENST00000546304 GMPR2Q9P2T1 348 aaKnown RBP8.15□□□□□ -1.1
PRKDC-211ENST00000546304 CDV3Q9UKY7 258 aaKnown RBP8.15□□□□□ -1.1
PRKDC-211ENST00000546304 PNPLA7Q6ZV29 1317 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 NR3C2P08235 984 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 TIMP2P16035 220 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 SSFA2P28290 1259 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 EXOSC9Q06265 439 aaKnown RBP8.14□□□□□ -1.11
PRKDC-211ENST00000546304 SLC15A2Q16348 729 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 TWISTNBQ3B726 338 aaPredicted RBP8.14□□□□□ -1.11
PRKDC-211ENST00000546304 INTS5Q6P9B9 1019 aaKnown RBP8.14□□□□□ -1.11
PRKDC-211ENST00000546304 VASH1Q7L8A9 365 aaPredicted RBP8.14□□□□□ -1.11
PRKDC-211ENST00000546304 ZBTB33Q86T24 672 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 AMIGO3Q86WK7 504 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 SENP2Q9HC62 589 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 TFCP2L1Q9NZI6 479 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 RTCBQ9Y3I0 505 aaKnown RBP8.14□□□□□ -1.11
PRKDC-211ENST00000546304 USP16Q9Y5T5 823 aa8.14□□□□□ -1.11
PRKDC-211ENST00000546304 AFDNP55196 1824 aaKnown RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 ELL2O00472 640 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 EIF2S2P20042 333 aaKnown RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 CANXP27824 592 aaKnown RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 PIP4K2AP48426 406 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 R3HDM1Q15032 1099 aaKnown RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 TRMT2AQ8IZ69 625 aaKnown RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 SLC10A4Q96EP9 437 aa8.13□□□□□ -1.11
PRKDC-211ENST00000546304 CHPF2Q9P2E5 772 aa8.13□□□□□ -1.11
PRKDC-211ENST00000546304 ZNF330Q9Y3S2 320 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-211ENST00000546304 LRP5O75197 1615 aa8.13□□□□□ -1.11
PRKDC-211ENST00000546304 GOLGB1Q14789 3259 aaKnown RBP8.12□□□□□ -1.11
PRKDC-211ENST00000546304 RPS6KA4O75676 772 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 A1BGP04217 495 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 FSHRP23945 695 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 IL6STP40189 918 aaPredicted RBP8.12□□□□□ -1.11
PRKDC-211ENST00000546304 WDR4P57081 412 aaKnown RBP8.12□□□□□ -1.11
PRKDC-211ENST00000546304 PROSER3Q2NL68 480 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 NBPF10Q6P3W6 841 aaKnown RBP8.12□□□□□ -1.11
PRKDC-211ENST00000546304 NBPF15Q8N660 670 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 MTMR14Q8NCE2 650 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 ADAM32Q8TC27 787 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 TRIM47Q96LD4 638 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 CHMP4AQ9BY43 222 aa8.12□□□□□ -1.11
PRKDC-211ENST00000546304 DBF4Q9UBU7 674 aaPredicted RBP8.12□□□□□ -1.11
PRKDC-211ENST00000546304 USP42Q9H9J4 1324 aaKnown RBP8.11□□□□□ -1.11
PRKDC-211ENST00000546304 APBB1O00213 710 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 ANXA1P04083 346 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 CT47B1P0C2W7 299 aaPredicted RBP8.11□□□□□ -1.11
PRKDC-211ENST00000546304 MYL6BP14649 208 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 EIF5P55010 431 aaKnown RBP8.11□□□□□ -1.11
PRKDC-211ENST00000546304 CCDC30Q5VVM6 783 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 SMIM5Q71RC9 77 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 LRP10Q7Z4F1 713 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 NPM2Q86SE8 214 aaKnown RBP8.11□□□□□ -1.11
PRKDC-211ENST00000546304 FLAD1Q8NFF5 587 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 KIFC2Q96AC6 838 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 STK31Q9BXU1 1019 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 DDX21Q9NR30 783 aaKnown RBP eCLIP8.11□□□□□ -1.11
PRKDC-211ENST00000546304 LAMB2P55268 1798 aa8.11□□□□□ -1.11
PRKDC-211ENST00000546304 NRXN2Q9P2S2 1712 aa8.1□□□□□ -1.11
PRKDC-211ENST00000546304 VAMP4O75379 141 aa8.1□□□□□ -1.11
PRKDC-211ENST00000546304 ZIC2O95409 532 aaPredicted RBP8.1□□□□□ -1.11
PRKDC-211ENST00000546304 TRAPPC3LQ5T215 181 aa8.1□□□□□ -1.11
PRKDC-211ENST00000546304 TRIM46Q7Z4K8 759 aa8.1□□□□□ -1.11
PRKDC-211ENST00000546304 COL23A1Q86Y22 540 aaPredicted RBP8.1□□□□□ -1.11
PRKDC-211ENST00000546304 ZNF428Q96B54 188 aa8.1□□□□□ -1.11
PRKDC-211ENST00000546304 KCTD15Q96SI1 283 aaPredicted RBP8.1□□□□□ -1.11
PRKDC-211ENST00000546304 PDGFDQ9GZP0 370 aaPredicted RBP8.1□□□□□ -1.11
PRKDC-211ENST00000546304 ATP10DQ9P241 1426 aa8.1□□□□□ -1.11
PRKDC-211ENST00000546304 PXDNLA1KZ92 1463 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 KIF13BQ9NQT8 1826 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 A0A087WZG4 1122 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 TCERG1O14776 1098 aaKnown RBP8.09□□□□□ -1.11
PRKDC-211ENST00000546304 BMP1P13497 986 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 RFC4P35249 363 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 KIF6Q6ZMV9 814 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 DZIP3Q86Y13 1208 aaKnown RBP8.09□□□□□ -1.11
PRKDC-211ENST00000546304 CCDC116Q8IYX3 515 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 XAGE3Q8WTP9 111 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 ITPKCQ96DU7 683 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 ZFAND3Q9H8U3 227 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 SNRKQ9NRH2 765 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 SMC4Q9NTJ3 1288 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 HYPKQ9NX55 129 aa8.09□□□□□ -1.11
PRKDC-211ENST00000546304 SRP68Q9UHB9 627 aaKnown RBP8.09□□□□□ -1.11
PRKDC-211ENST00000546304 MAP3K15Q6ZN16 1313 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 ZBBXA8MT70 800 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 GPR37L1O60883 481 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 CAMTA2O94983 1202 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 SNRPBP14678 240 aaKnown RBP8.08□□□□□ -1.12
PRKDC-211ENST00000546304 NBPF20Q3BBV1 942 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 ALDH1L2Q3SY69 923 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 TTLL7Q6ZT98 887 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 SSH1Q8WYL5 1049 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 ZNF775Q96BV0 537 aaPredicted RBP8.08□□□□□ -1.12
PRKDC-211ENST00000546304 BCL2L13Q9BXK5 485 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 NARFQ9UHQ1 456 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 TBC1D2BQ9UPU7 963 aa8.08□□□□□ -1.12
PRKDC-211ENST00000546304 ZNF652Q9Y2D9 606 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms