RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MPHOSPH8Q99549 860 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 ANKRD2Q9GZV1 360 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 PCDHB8Q9UN66 801 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 PCDHB13Q9Y5F0 798 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 ZNF804BA4D1E1 1349 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 POLR2AP24928 1970 aaKnown RBP10.78□□□□□ -0.68
USP28-215ENST00000545608 SNAP23O00161 211 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 FOXO4P98177 505 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 CHRNDQ07001 517 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 STRIP1Q5VSL9 837 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 PRAMEF18Q5VWM3 479 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 FAM9BQ8IZU0 186 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 PITPNM2Q9BZ72 1349 aa10.78□□□□□ -0.68
USP28-215ENST00000545608 ANKRD18BA2A2Z9 1011 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 WNT10BO00744 389 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 TAF5LO75529 589 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 SLC10A3P09131 477 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 PSEN1P49768 467 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 GTF2IP78347 998 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 EPHA10Q5JZY3 1008 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 TTLL5Q6EMB2 1281 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 MOB2Q70IA6 237 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 HELBQ8NG08 1087 aaPredicted RBP10.77□□□□□ -0.69
USP28-215ENST00000545608 CSRNP1Q96S65 589 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 MCOLN1Q9GZU1 580 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 WDR70Q9NW82 654 aa10.77□□□□□ -0.69
USP28-215ENST00000545608 CCDC85CA6NKD9 419 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 UBE2Q2LH0YL09 131 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 KCNJ4P48050 445 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 RASAL3Q86YV0 1011 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 KIAA0825Q8IV33 1275 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 OGFOD1Q8N543 542 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 CD209Q9NNX6 404 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 RNF186Q9NXI6 227 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 MYO3BQ8WXR4 1341 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 IRS2Q9Y4H2 1338 aa10.76□□□□□ -0.69
USP28-215ENST00000545608 TRPA1O75762 1119 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 SASH1O94885 1247 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 FKBP1BP68106 108 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 IFIT5Q13325 482 aaKnown RBP10.75□□□□□ -0.69
USP28-215ENST00000545608 DGKZQ13574 1117 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 LMBR1LQ6UX01 489 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 ZBED3Q96IU2 234 aaPredicted RBP10.75□□□□□ -0.69
USP28-215ENST00000545608 ZNF594Q96JF6 807 aaPredicted RBP10.75□□□□□ -0.69
USP28-215ENST00000545608 CHMP3Q9Y3E7 222 aa10.75□□□□□ -0.69
USP28-215ENST00000545608 GRM8O00222 908 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 C15orf52Q6ZUT6 534 aaKnown RBP10.74□□□□□ -0.69
USP28-215ENST00000545608 CERS5Q8N5B7 392 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 SAGE1Q9NXZ1 904 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 HDAC9Q9UKV0 1011 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 PSME4Q14997 1843 aa10.74□□□□□ -0.69
USP28-215ENST00000545608 PLIN1O60240 522 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 ALDH1L1O75891 902 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 MMP14P50281 582 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 FXR2P51116 673 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP28-215ENST00000545608 TTLL12Q14166 644 aaPredicted RBP10.73□□□□□ -0.69
USP28-215ENST00000545608 SLC4A10Q6U841 1118 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 LDHAL6AQ6ZMR3 332 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 C9orf78Q9NZ63 289 aaPredicted RBP10.73□□□□□ -0.69
USP28-215ENST00000545608 PCDHAC2Q9Y5I4 1007 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 MYH3P11055 1940 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 CASP8AP2Q9UKL3 1982 aa10.73□□□□□ -0.69
USP28-215ENST00000545608 SPEF2Q9C093 1822 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 IL1R1P14778 569 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 RGS19P49795 217 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 PRKG1Q13976 671 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 CCDC57Q2TAC2 916 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 KAZALD1Q96I82 304 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 SUCLG2Q96I99 432 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 SRCIN1Q9C0H9 1055 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 CNNM1Q9NRU3 951 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 JAG2Q9Y219 1238 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 ZNF521Q96K83 1311 aa10.72□□□□□ -0.69
USP28-215ENST00000545608 F8W031 263 aaPredicted RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 NF2P35240 595 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 PTPN12Q05209 780 aaKnown RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 DLGAP5Q15398 846 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 TAF7LQ5H9L4 462 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 ZNF804AQ7Z570 1209 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 APOBEC3FQ8IUX4 373 aaKnown RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 PUS3Q9BZE2 481 aaKnown RBP10.71□□□□□ -0.69
USP28-215ENST00000545608 FZD1Q9UP38 647 aa10.71□□□□□ -0.69
USP28-215ENST00000545608 ZNF646O15015 1829 aaPredicted RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 PAPPA2Q9BXP8 1791 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 AOX1Q06278 1338 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 NBPF7P0C2Y1 421 aaPredicted RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 MKRN3Q13064 507 aaKnown RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 CFAP100Q494V2 611 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 ARMC9Q7Z3E5 817 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 MRPL50Q8N5N7 158 aaKnown RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 MTMR14Q8NCE2 650 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 PRMT6Q96LA8 375 aaPredicted RBP10.7□□□□□ -0.7
USP28-215ENST00000545608 DEFB129Q9H1M3 183 aa10.7□□□□□ -0.7
USP28-215ENST00000545608 UTYO14607 1347 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 CLRN2A0PK11 232 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 TBC1D8O95759 1140 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 TM4SF4P48230 202 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 FKBP1AP62942 108 aaKnown RBP10.69□□□□□ -0.7
USP28-215ENST00000545608 MLLT1Q03111 559 aaPredicted RBP10.69□□□□□ -0.7
USP28-215ENST00000545608 LDLRAD1Q5T700 205 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms