RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 MAST3O60307 1309 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 MYH7P12883 1935 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 CCDC69A6NI79 296 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 RNF113AO15541 343 aaKnown RBP16.01■□□□□ 0.15
VPS33A-208ENST00000543633 U2AF2P26368 475 aaKnown RBP eCLIP16.01■□□□□ 0.15
VPS33A-208ENST00000543633 ME1P48163 572 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 LMBR1LQ6UX01 489 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 ILDR1Q86SU0 546 aaPredicted RBP16.01■□□□□ 0.15
VPS33A-208ENST00000543633 LRRC2Q9BYS8 371 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 PRDM10Q9NQV6 1147 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 POLR3EQ9NVU0 708 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 USP16Q9Y5T5 823 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 GOLIM4O00461 696 aa16■□□□□ 0.15
VPS33A-208ENST00000543633 DHX16O60231 1041 aaKnown RBP16■□□□□ 0.15
VPS33A-208ENST00000543633 ZFYP08048 801 aaPredicted RBP16■□□□□ 0.15
VPS33A-208ENST00000543633 GABPB1Q06547 395 aaPredicted RBP16■□□□□ 0.15
VPS33A-208ENST00000543633 ERO1AQ96HE7 468 aa16■□□□□ 0.15
VPS33A-208ENST00000543633 FBXO3Q9UK99 471 aa16■□□□□ 0.15
VPS33A-208ENST00000543633 C4AP0C0L4 1744 aa16■□□□□ 0.15
VPS33A-208ENST00000543633 C4BP0C0L5 1744 aa16■□□□□ 0.15
VPS33A-208ENST00000543633 CHRNA2Q15822 529 aa15.99■□□□□ 0.15
VPS33A-208ENST00000543633 CCAR2Q8N163 923 aaKnown RBP15.99■□□□□ 0.15
VPS33A-208ENST00000543633 AOPEPQ8N6M6 819 aa15.99■□□□□ 0.15
VPS33A-208ENST00000543633 TPM4P67936 248 aa15.99■□□□□ 0.15
VPS33A-208ENST00000543633 CEBPZQ03701 1054 aaKnown RBP15.99■□□□□ 0.15
VPS33A-208ENST00000543633 LINC00301Q8NCQ3 95 aa15.99■□□□□ 0.15
VPS33A-208ENST00000543633 ZNF397Q8NF99 534 aaPredicted RBP15.99■□□□□ 0.15
VPS33A-208ENST00000543633 DDX41Q9UJV9 622 aaKnown RBP15.99■□□□□ 0.15
VPS33A-208ENST00000543633 PCDHA7Q9UN72 937 aa15.99■□□□□ 0.15
VPS33A-208ENST00000543633 NDUFB9Q9Y6M9 179 aa15.99■□□□□ 0.15
VPS33A-208ENST00000543633 PSDA5PKW4 1024 aaPredicted RBP15.98■□□□□ 0.15
VPS33A-208ENST00000543633 EYA2O00167 538 aa15.98■□□□□ 0.15
VPS33A-208ENST00000543633 NRDCO43847 1150 aa15.98■□□□□ 0.15
VPS33A-208ENST00000543633 KIF18AQ8NI77 898 aa15.98■□□□□ 0.15
VPS33A-208ENST00000543633 FTOQ9C0B1 505 aaKnown RBP eCLIP15.98■□□□□ 0.15
VPS33A-208ENST00000543633 NLRP2Q9NX02 1062 aa15.98■□□□□ 0.15
VPS33A-208ENST00000543633 CWC25Q9NXE8 425 aaPredicted RBP15.98■□□□□ 0.15
VPS33A-208ENST00000543633 KIAA1468Q9P260 1216 aa15.98■□□□□ 0.15
VPS33A-208ENST00000543633 IFIT1P09914 478 aaKnown RBP15.97■□□□□ 0.15
VPS33A-208ENST00000543633 CCT2P78371 535 aaKnown RBP15.97■□□□□ 0.15
VPS33A-208ENST00000543633 ZRSR1Q15695 479 aaKnown RBP15.97■□□□□ 0.15
VPS33A-208ENST00000543633 MORC2Q9Y6X9 1032 aaPredicted RBP15.97■□□□□ 0.15
VPS33A-208ENST00000543633 CHGBP05060 677 aa15.97■□□□□ 0.15
VPS33A-208ENST00000543633 FDPSP14324 419 aaKnown RBP15.97■□□□□ 0.15
VPS33A-208ENST00000543633 CCDC191Q8NCU4 936 aa15.97■□□□□ 0.15
VPS33A-208ENST00000543633 ATP5J2-PTCD1G3V325 749 aa15.96■□□□□ 0.15
VPS33A-208ENST00000543633 PTCD1O75127 700 aaKnown RBP15.96■□□□□ 0.15
VPS33A-208ENST00000543633 STK38Q15208 465 aa15.96■□□□□ 0.15
VPS33A-208ENST00000543633 NEUROD6Q96NK8 337 aa15.96■□□□□ 0.15
VPS33A-208ENST00000543633 SDF4Q9BRK5 362 aa15.96■□□□□ 0.15
VPS33A-208ENST00000543633 NCOA5Q9HCD5 579 aaKnown RBP15.96■□□□□ 0.15
VPS33A-208ENST00000543633 NEDD4P46934 1319 aa15.96■□□□□ 0.15
VPS33A-208ENST00000543633 COL22A1Q8NFW1 1626 aaPredicted RBP15.96■□□□□ 0.14
VPS33A-208ENST00000543633 IKBKBO14920 756 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 CCP110O43303 1012 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 MYO1BO43795 1136 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 NLRP12P59046 1061 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 IMMTQ16891 758 aaKnown RBP15.95■□□□□ 0.14
VPS33A-208ENST00000543633 NBPF11Q86T75 865 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 FBXO18Q8NFZ0 1043 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 C8orf76Q96K31 380 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 TIGD1Q96MW7 591 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 SPDYE4A6NLX3 237 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 USP27XA6NNY8 438 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 CYP27B1O15528 508 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 FAM193AP78312 1265 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 FILIP1Q7Z7B0 1213 aa15.95■□□□□ 0.14
VPS33A-208ENST00000543633 COL16A1Q07092 1604 aaPredicted RBP15.95■□□□□ 0.14
VPS33A-208ENST00000543633 SPTLC2O15270 562 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 SLU7O95391 586 aaKnown RBP15.94■□□□□ 0.14
VPS33A-208ENST00000543633 CABP4P57796 275 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 SF3A1Q15459 793 aaKnown RBP15.94■□□□□ 0.14
VPS33A-208ENST00000543633 MYSM1Q5VVJ2 828 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 MB21D2Q8IYB1 491 aaPredicted RBP15.94■□□□□ 0.14
VPS33A-208ENST00000543633 L2HGDHQ9H9P8 463 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 PRDM11Q9NQV5 511 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 KCPQ6ZWJ8 1503 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 A0A1B0GUL7 405 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 M0R2C6 588 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 CMA1P23946 247 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 NDUFA8P51970 172 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 FOSBP53539 338 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 ARID5BQ14865 1188 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 AKAP2Q9Y2D5 859 aa15.94■□□□□ 0.14
VPS33A-208ENST00000543633 ATRNO75882 1429 aa15.93■□□□□ 0.14
VPS33A-208ENST00000543633 TOM1O60784 492 aa15.93■□□□□ 0.14
VPS33A-208ENST00000543633 SLC3A2P08195 630 aaKnown RBP15.93■□□□□ 0.14
VPS33A-208ENST00000543633 CREBRFQ8IUR6 639 aa15.93■□□□□ 0.14
VPS33A-208ENST00000543633 ZNF592Q92610 1267 aa15.93■□□□□ 0.14
VPS33A-208ENST00000543633 FAM53CQ9NYF3 392 aa15.93■□□□□ 0.14
VPS33A-208ENST00000543633 ZNF215Q9UL58 517 aaPredicted RBP15.93■□□□□ 0.14
VPS33A-208ENST00000543633 PHLPP1O60346 1717 aa15.93■□□□□ 0.14
VPS33A-208ENST00000543633 COL5A2P05997 1499 aaPredicted RBP15.92■□□□□ 0.14
VPS33A-208ENST00000543633 TIMM10P62072 90 aa15.92■□□□□ 0.14
VPS33A-208ENST00000543633 GUCY1B3Q02153 619 aa15.92■□□□□ 0.14
VPS33A-208ENST00000543633 APPBP2Q92624 585 aa15.92■□□□□ 0.14
VPS33A-208ENST00000543633 OSBP2Q969R2 916 aa15.92■□□□□ 0.14
VPS33A-208ENST00000543633 ORC3Q9UBD5 711 aaPredicted RBP15.92■□□□□ 0.14
VPS33A-208ENST00000543633 NAP1L2Q9ULW6 460 aaPredicted RBP15.92■□□□□ 0.14
VPS33A-208ENST00000543633 ECM29Q5VYK3 1845 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms