RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 STRIP1Q5VSL9 837 aa7.73□□□□□ -1.17
LTBR-212ENST00000543542 RSBN1LQ6PCB5 846 aaPredicted RBP7.73□□□□□ -1.17
LTBR-212ENST00000543542 TDRD7Q8NHU6 1098 aaKnown RBP7.73□□□□□ -1.17
LTBR-212ENST00000543542 EAF2Q96CJ1 260 aaPredicted RBP7.73□□□□□ -1.17
LTBR-212ENST00000543542 CCDC136Q96JN2 1154 aa7.73□□□□□ -1.17
LTBR-212ENST00000543542 TLR7Q9NYK1 1049 aaKnown RBP7.73□□□□□ -1.17
LTBR-212ENST00000543542 HDAC9Q9UKV0 1011 aa7.73□□□□□ -1.17
LTBR-212ENST00000543542 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.73□□□□□ -1.17
LTBR-212ENST00000543542 MYO3BQ8WXR4 1341 aa7.73□□□□□ -1.17
LTBR-212ENST00000543542 IRS2Q9Y4H2 1338 aa7.73□□□□□ -1.17
LTBR-212ENST00000543542 PSME4Q14997 1843 aa7.73□□□□□ -1.17
LTBR-212ENST00000543542 SCN9AQ15858 1988 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 SEMA3EO15041 775 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 VIL1P09327 827 aaKnown RBP7.72□□□□□ -1.17
LTBR-212ENST00000543542 VEGFAP15692 232 aaPredicted RBP7.72□□□□□ -1.17
LTBR-212ENST00000543542 RPS12P25398 132 aaKnown RBP7.72□□□□□ -1.17
LTBR-212ENST00000543542 RBM5P52756 815 aaKnown RBP eCLIP7.72□□□□□ -1.17
LTBR-212ENST00000543542 EAPPQ56P03 285 aaPredicted RBP7.72□□□□□ -1.17
LTBR-212ENST00000543542 MFSD14BQ5SR56 506 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 DACT2Q5SW24 774 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 RBM26Q5T8P6 1007 aaKnown RBP7.72□□□□□ -1.17
LTBR-212ENST00000543542 OGFOD1Q8N543 542 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 AGBL3Q8NEM8 1001 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 WDR66Q8TBY9 1149 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 TBC1D22AQ8WUA7 517 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 MXD3Q9BW11 206 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 NMRK2Q9NPI5 230 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 ABCF2Q9UG63 623 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 CNOT7Q9UIV1 285 aaKnown RBP7.72□□□□□ -1.17
LTBR-212ENST00000543542 HACL1Q9UJ83 578 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 DBNLQ9UJU6 430 aaKnown RBP7.72□□□□□ -1.17
LTBR-212ENST00000543542 CLEC11AQ9Y240 323 aa7.72□□□□□ -1.17
LTBR-212ENST00000543542 SCN4AP35499 1836 aa7.71□□□□□ -1.17
LTBR-212ENST00000543542 USP17L8P0C7I0 530 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 SPTY2D1Q68D10 685 aaPredicted RBP7.71□□□□□ -1.18
LTBR-212ENST00000543542 KIAA0825Q8IV33 1275 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 MICALL2Q8IY33 904 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 ZGPATQ8N5A5 531 aaKnown RBP7.71□□□□□ -1.18
LTBR-212ENST00000543542 SPATA5Q8NB90 893 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 ZNF784Q8NCA9 323 aaPredicted RBP7.71□□□□□ -1.18
LTBR-212ENST00000543542 DNAJC2Q99543 621 aaKnown RBP7.71□□□□□ -1.18
LTBR-212ENST00000543542 LNPKQ9C0E8 428 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 SNRKQ9NRH2 765 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 WDR90Q96KV7 1748 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 FAM205AQ6ZU69 1335 aa7.71□□□□□ -1.18
LTBR-212ENST00000543542 LDHBP07195 334 aaKnown RBP7.7□□□□□ -1.18
LTBR-212ENST00000543542 ARID4AP29374 1257 aaPredicted RBP7.7□□□□□ -1.18
LTBR-212ENST00000543542 EPHX2P34913 555 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 EPS15P42566 896 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 SCNN1DP51172 638 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 FKBP1AP62942 108 aaKnown RBP7.7□□□□□ -1.18
LTBR-212ENST00000543542 RASGRF1Q13972 1273 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 ERICH6Q7L0X2 663 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 DZIP1Q86YF9 867 aaKnown RBP7.7□□□□□ -1.18
LTBR-212ENST00000543542 SMC5Q8IY18 1101 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 DPF2Q92785 391 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 L3MBTL3Q96JM7 780 aaPredicted RBP7.7□□□□□ -1.18
LTBR-212ENST00000543542 ADARB2Q9NS39 739 aaKnown RBP7.7□□□□□ -1.18
LTBR-212ENST00000543542 ECHDC1Q9NTX5 307 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 GPRC5DQ9NZD1 345 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 RAI14Q9P0K7 980 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 HMG20BQ9P0W2 317 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 LRP2BPQ9P2M1 347 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 TTF2Q9UNY4 1162 aaKnown RBP7.7□□□□□ -1.18
LTBR-212ENST00000543542 MAST3O60307 1309 aa7.7□□□□□ -1.18
LTBR-212ENST00000543542 ERC2O15083 957 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 MX1P20591 662 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 MCAMP43121 646 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 ZAP70P43403 619 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 NUCB1Q02818 461 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 DLGAP5Q15398 846 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 KIF4BQ2VIQ3 1234 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 TBC1D10BQ4KMP7 808 aaPredicted RBP7.69□□□□□ -1.18
LTBR-212ENST00000543542 ERICH6BQ5W0A0 696 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 PI16Q6UXB8 463 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 CENPQQ7L2Z9 268 aaPredicted RBP7.69□□□□□ -1.18
LTBR-212ENST00000543542 SAMD7Q7Z3H4 446 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 PNMA8AQ86V59 439 aaPredicted RBP7.69□□□□□ -1.18
LTBR-212ENST00000543542 CHD1LQ86WJ1 897 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 CERS5Q8N5B7 392 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 NOL10Q9BSC4 688 aaKnown RBP7.69□□□□□ -1.18
LTBR-212ENST00000543542 BOLA2Q9H3K6 86 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 TAF1DQ9H5J8 278 aaPredicted RBP7.69□□□□□ -1.18
LTBR-212ENST00000543542 MYOZ2Q9NPC6 264 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 PPP4R2Q9NY27 417 aa7.69□□□□□ -1.18
LTBR-212ENST00000543542 ZNF646O15015 1829 aaPredicted RBP7.68□□□□□ -1.18
LTBR-212ENST00000543542 SHTN1A0MZ66 631 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 GOLIM4O00461 696 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 MYO1BO43795 1136 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 IDH1O75874 414 aaKnown RBP7.68□□□□□ -1.18
LTBR-212ENST00000543542 ATP5JP18859 108 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 MMP14P50281 582 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 GSTO1P78417 241 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 SCARF1Q14162 830 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 TTF1Q15361 905 aaPredicted RBP7.68□□□□□ -1.18
LTBR-212ENST00000543542 TSHZ3Q63HK5 1081 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 TBC1D9Q6ZT07 1266 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 USP50Q70EL3 339 aaPredicted RBP7.68□□□□□ -1.18
LTBR-212ENST00000543542 SLF2Q8IX21 1173 aa7.68□□□□□ -1.18
LTBR-212ENST00000543542 TEKT1Q969V4 418 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms