RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 WDR66Q8TBY9 1149 aa14.91□□□□□ -0.02
DDX55-210ENST00000543016 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.91□□□□□ -0.02
DDX55-210ENST00000543016 CCDC8Q9H0W5 538 aaPredicted RBP14.91□□□□□ -0.02
DDX55-210ENST00000543016 CHD4Q14839 1912 aa14.91□□□□□ -0.02
DDX55-210ENST00000543016 GLTPD2A6NH11 291 aa14.9□□□□□ -0.02
DDX55-210ENST00000543016 PHKA1P46020 1223 aa14.9□□□□□ -0.02
DDX55-210ENST00000543016 TTC39AQ5SRH9 613 aa14.9□□□□□ -0.02
DDX55-210ENST00000543016 TTLL5Q6EMB2 1281 aa14.9□□□□□ -0.02
DDX55-210ENST00000543016 ZGPATQ8N5A5 531 aaKnown RBP14.9□□□□□ -0.02
DDX55-210ENST00000543016 SUGT1Q9Y2Z0 365 aa14.9□□□□□ -0.02
DDX55-210ENST00000543016 CCDC88AQ3V6T2 1871 aa14.9□□□□□ -0.02
DDX55-210ENST00000543016 KDM2BQ8NHM5 1336 aa14.9□□□□□ -0.02
DDX55-210ENST00000543016 SMARCA5O60264 1052 aaPredicted RBP14.89□□□□□ -0.03
DDX55-210ENST00000543016 AGBL3Q8NEM8 1001 aa14.89□□□□□ -0.03
DDX55-210ENST00000543016 DPF2Q92785 391 aa14.89□□□□□ -0.03
DDX55-210ENST00000543016 ECHDC1Q9NTX5 307 aa14.89□□□□□ -0.03
DDX55-210ENST00000543016 COL4A5P29400 1685 aa14.89□□□□□ -0.03
DDX55-210ENST00000543016 TTC41PQ6P2S7 1318 aa14.89□□□□□ -0.03
DDX55-210ENST00000543016 ARAP2Q8WZ64 1704 aa14.89□□□□□ -0.03
DDX55-210ENST00000543016 ERC2O15083 957 aa14.88□□□□□ -0.03
DDX55-210ENST00000543016 RAD17O75943 681 aa14.88□□□□□ -0.03
DDX55-210ENST00000543016 ATP5JP18859 108 aa14.88□□□□□ -0.03
DDX55-210ENST00000543016 GTF2IP78347 998 aa14.88□□□□□ -0.03
DDX55-210ENST00000543016 DACT2Q5SW24 774 aa14.88□□□□□ -0.03
DDX55-210ENST00000543016 B4GALNT3Q6L9W6 998 aa14.88□□□□□ -0.03
DDX55-210ENST00000543016 RSBN1LQ6PCB5 846 aaPredicted RBP14.88□□□□□ -0.03
DDX55-210ENST00000543016 L3MBTL3Q96JM7 780 aaPredicted RBP14.88□□□□□ -0.03
DDX55-210ENST00000543016 SALL1Q9NSC2 1324 aa14.88□□□□□ -0.03
DDX55-210ENST00000543016 PSMD14O00487 310 aa14.87□□□□□ -0.03
DDX55-210ENST00000543016 RASGRF1Q13972 1273 aa14.87□□□□□ -0.03
DDX55-210ENST00000543016 TMED8Q6PL24 325 aaPredicted RBP14.87□□□□□ -0.03
DDX55-210ENST00000543016 SPATA5Q8NB90 893 aa14.87□□□□□ -0.03
DDX55-210ENST00000543016 TLR7Q9NYK1 1049 aaKnown RBP14.87□□□□□ -0.03
DDX55-210ENST00000543016 STAP2Q9UGK3 403 aa14.87□□□□□ -0.03
DDX55-210ENST00000543016 ZNF541Q9H0D2 1346 aa14.87□□□□□ -0.03
DDX55-210ENST00000543016 GOLGB1Q14789 3259 aaKnown RBP14.86□□□□□ -0.03
DDX55-210ENST00000543016 IQCA1LA6NCM1 817 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 MX1P20591 662 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 MFSD14BQ5SR56 506 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 SPTY2D1Q68D10 685 aaPredicted RBP14.86□□□□□ -0.03
DDX55-210ENST00000543016 LNPKQ9C0E8 428 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 KCNQ5Q9NR82 932 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 HMG20BQ9P0W2 317 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 GJA3Q9Y6H8 435 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 AOX1Q06278 1338 aa14.86□□□□□ -0.03
DDX55-210ENST00000543016 GLRX3O76003 335 aaKnown RBP14.85□□□□□ -0.03
DDX55-210ENST00000543016 LMOD1P29536 600 aaPredicted RBP14.85□□□□□ -0.03
DDX55-210ENST00000543016 TTF1Q15361 905 aaPredicted RBP14.85□□□□□ -0.03
DDX55-210ENST00000543016 OGFOD1Q8N543 542 aa14.85□□□□□ -0.03
DDX55-210ENST00000543016 FBXW7Q969H0 707 aa14.85□□□□□ -0.03
DDX55-210ENST00000543016 GMLQ99445 158 aa14.85□□□□□ -0.03
DDX55-210ENST00000543016 MRIQ9BWK5 157 aa14.85□□□□□ -0.03
DDX55-210ENST00000543016 IQSEC3Q9UPP2 1182 aaPredicted RBP14.85□□□□□ -0.03
DDX55-210ENST00000543016 TIAM2Q8IVF5 1701 aa14.85□□□□□ -0.03
DDX55-210ENST00000543016 MAST3O60307 1309 aa14.85□□□□□ -0.03
DDX55-210ENST00000543016 DDNO94850 711 aaPredicted RBP14.84□□□□□ -0.03
DDX55-210ENST00000543016 MCAMP43121 646 aa14.84□□□□□ -0.03
DDX55-210ENST00000543016 CHAF1AQ13111 956 aaPredicted RBP14.84□□□□□ -0.03
DDX55-210ENST00000543016 OSBPL3Q9H4L5 887 aa14.84□□□□□ -0.03
DDX55-210ENST00000543016 HDAC9Q9UKV0 1011 aa14.84□□□□□ -0.03
DDX55-210ENST00000543016 SALL3Q9BXA9 1300 aa14.84□□□□□ -0.03
DDX55-210ENST00000543016 H7C1D1 291 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 USP17L8P0C7I0 530 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 GMPSP49915 693 aaPredicted RBP14.83□□□□□ -0.04
DDX55-210ENST00000543016 PDE1AP54750 535 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 HDLBPQ00341 1268 aaKnown RBP14.83□□□□□ -0.04
DDX55-210ENST00000543016 TICAM2Q86XR7 235 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 C16orf71Q8IYS4 520 aaPredicted RBP14.83□□□□□ -0.04
DDX55-210ENST00000543016 HAUS7Q99871 368 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 BCL11AQ9H165 835 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 GPRC5DQ9NZD1 345 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 SCN9AQ15858 1988 aa14.83□□□□□ -0.04
DDX55-210ENST00000543016 PSME4Q14997 1843 aa14.82□□□□□ -0.04
DDX55-210ENST00000543016 LDHBP07195 334 aaKnown RBP14.82□□□□□ -0.04
DDX55-210ENST00000543016 VEGFAP15692 232 aaPredicted RBP14.82□□□□□ -0.04
DDX55-210ENST00000543016 YY1P25490 414 aa14.82□□□□□ -0.04
DDX55-210ENST00000543016 ZNF280AP59817 542 aaPredicted RBP14.82□□□□□ -0.04
DDX55-210ENST00000543016 SCARF1Q14162 830 aa14.82□□□□□ -0.04
DDX55-210ENST00000543016 SLF2Q8IX21 1173 aa14.82□□□□□ -0.04
DDX55-210ENST00000543016 CNOT7Q9UIV1 285 aaKnown RBP14.82□□□□□ -0.04
DDX55-210ENST00000543016 HACL1Q9UJ83 578 aa14.82□□□□□ -0.04
DDX55-210ENST00000543016 SCNN1DP51172 638 aa14.81□□□□□ -0.04
DDX55-210ENST00000543016 LRRFIP1Q32MZ4 808 aaKnown RBP14.81□□□□□ -0.04
DDX55-210ENST00000543016 ERICH6Q7L0X2 663 aa14.81□□□□□ -0.04
DDX55-210ENST00000543016 PLEKHM2Q8IWE5 1019 aa14.81□□□□□ -0.04
DDX55-210ENST00000543016 CERS5Q8N5B7 392 aa14.81□□□□□ -0.04
DDX55-210ENST00000543016 BOLA2Q9H3K6 86 aa14.81□□□□□ -0.04
DDX55-210ENST00000543016 SERPINA10Q9UK55 444 aa14.81□□□□□ -0.04
DDX55-210ENST00000543016 ZBTB12Q9Y330 459 aaPredicted RBP14.81□□□□□ -0.04
DDX55-210ENST00000543016 UTRNP46939 3433 aa14.81□□□□□ -0.04
DDX55-210ENST00000543016 CYP2E1P05181 493 aaPredicted RBP14.8□□□□□ -0.04
DDX55-210ENST00000543016 ZAP70P43403 619 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 GSTO1P78417 241 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 MAP3K12Q12852 859 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 PNMA8AQ86V59 439 aaPredicted RBP14.8□□□□□ -0.04
DDX55-210ENST00000543016 KIAA0825Q8IV33 1275 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 MTMR14Q8NCE2 650 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 PI4K2BQ8TCG2 481 aa14.8□□□□□ -0.04
DDX55-210ENST00000543016 OTUD7AQ8TE49 926 aaPredicted RBP14.8□□□□□ -0.04
DDX55-210ENST00000543016 SNRKQ9NRH2 765 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms