RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CCDC88AQ3V6T2 1871 aa20.93■□□□□ 0.94
LIG1-204ENST00000542460 C1QTNF8P60827 252 aa20.93■□□□□ 0.94
LIG1-204ENST00000542460 DPY19L2Q6NUT2 758 aa20.93■□□□□ 0.94
LIG1-204ENST00000542460 OTUD7AQ8TE49 926 aaPredicted RBP20.93■□□□□ 0.94
LIG1-204ENST00000542460 GPBP1L1Q9HC44 474 aaPredicted RBP20.93■□□□□ 0.94
LIG1-204ENST00000542460 FAM205AQ6ZU69 1335 aa20.93■□□□□ 0.94
LIG1-204ENST00000542460 VIL1P09327 827 aaKnown RBP20.92■□□□□ 0.94
LIG1-204ENST00000542460 MX1P20591 662 aa20.92■□□□□ 0.94
LIG1-204ENST00000542460 SPATA5Q8NB90 893 aa20.92■□□□□ 0.94
LIG1-204ENST00000542460 FBXW7Q969H0 707 aa20.92■□□□□ 0.94
LIG1-204ENST00000542460 HMG20BQ9P0W2 317 aa20.92■□□□□ 0.94
LIG1-204ENST00000542460 PDS5AQ29RF7 1337 aaKnown RBP20.92■□□□□ 0.94
LIG1-204ENST00000542460 TTC41PQ6P2S7 1318 aa20.92■□□□□ 0.94
LIG1-204ENST00000542460 SALL3Q9BXA9 1300 aa20.92■□□□□ 0.94
LIG1-204ENST00000542460 ZNF541Q9H0D2 1346 aa20.92■□□□□ 0.94
LIG1-204ENST00000542460 DICER1Q9UPY3 1922 aaKnown RBP20.92■□□□□ 0.94
LIG1-204ENST00000542460 PSMD14O00487 310 aa20.91■□□□□ 0.94
LIG1-204ENST00000542460 ATP5JP18859 108 aa20.91■□□□□ 0.94
LIG1-204ENST00000542460 MCAMP43121 646 aa20.91■□□□□ 0.94
LIG1-204ENST00000542460 CHAF1AQ13111 956 aaPredicted RBP20.91■□□□□ 0.94
LIG1-204ENST00000542460 DACT2Q5SW24 774 aa20.91■□□□□ 0.94
LIG1-204ENST00000542460 GPC2Q8N158 579 aa20.91■□□□□ 0.94
LIG1-204ENST00000542460 WDR66Q8TBY9 1149 aa20.91■□□□□ 0.94
LIG1-204ENST00000542460 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.91■□□□□ 0.94
LIG1-204ENST00000542460 SCARF1Q14162 830 aa20.9■□□□□ 0.94
LIG1-204ENST00000542460 TBC1D22AQ8WUA7 517 aa20.9■□□□□ 0.94
LIG1-204ENST00000542460 STAP2Q9UGK3 403 aa20.9■□□□□ 0.94
LIG1-204ENST00000542460 JAG2Q9Y219 1238 aa20.9■□□□□ 0.94
LIG1-204ENST00000542460 GTF3C3Q9Y5Q9 886 aa20.9■□□□□ 0.94
LIG1-204ENST00000542460 ERC2O15083 957 aa20.89■□□□□ 0.94
LIG1-204ENST00000542460 PDE1AP54750 535 aa20.89■□□□□ 0.94
LIG1-204ENST00000542460 FKBP1AP62942 108 aaKnown RBP20.89■□□□□ 0.94
LIG1-204ENST00000542460 GJA3Q9Y6H8 435 aa20.89■□□□□ 0.94
LIG1-204ENST00000542460 GLTPD2A6NH11 291 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 RSBN1LQ6PCB5 846 aaPredicted RBP20.88■□□□□ 0.93
LIG1-204ENST00000542460 PI16Q6UXB8 463 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 PLEKHM2Q8IWE5 1019 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 SNRKQ9NRH2 765 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 TIAM2Q8IVF5 1701 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 MYO3BQ8WXR4 1341 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 PDE4AP27815 886 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 MFSD14BQ5SR56 506 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 TSHZ3Q63HK5 1081 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 BOLA2Q9H3K6 86 aa20.88■□□□□ 0.93
LIG1-204ENST00000542460 COL1A1P02452 1464 aaPredicted RBP20.87■□□□□ 0.93
LIG1-204ENST00000542460 SALL1Q9NSC2 1324 aa20.87■□□□□ 0.93
LIG1-204ENST00000542460 GLRX3O76003 335 aaKnown RBP20.87■□□□□ 0.93
LIG1-204ENST00000542460 DDNO94850 711 aaPredicted RBP20.87■□□□□ 0.93
LIG1-204ENST00000542460 RPS12P25398 132 aaKnown RBP20.87■□□□□ 0.93
LIG1-204ENST00000542460 ZAP70P43403 619 aa20.87■□□□□ 0.93
LIG1-204ENST00000542460 ZGPATQ8N5A5 531 aaKnown RBP20.87■□□□□ 0.93
LIG1-204ENST00000542460 AGBL3Q8NEM8 1001 aa20.87■□□□□ 0.93
LIG1-204ENST00000542460 MXD3Q9BW11 206 aa20.87■□□□□ 0.93
LIG1-204ENST00000542460 OSBPL3Q9H4L5 887 aa20.87■□□□□ 0.93
LIG1-204ENST00000542460 SCN9AQ15858 1988 aa20.86■□□□□ 0.93
LIG1-204ENST00000542460 CERS5Q8N5B7 392 aa20.86■□□□□ 0.93
LIG1-204ENST00000542460 PI4K2BQ8TCG2 481 aa20.86■□□□□ 0.93
LIG1-204ENST00000542460 HAUS7Q99871 368 aa20.86■□□□□ 0.93
LIG1-204ENST00000542460 ZBTB12Q9Y330 459 aaPredicted RBP20.86■□□□□ 0.93
LIG1-204ENST00000542460 AOX1Q06278 1338 aa20.85■□□□□ 0.93
LIG1-204ENST00000542460 CYP2E1P05181 493 aaPredicted RBP20.85■□□□□ 0.93
LIG1-204ENST00000542460 DPF2Q92785 391 aa20.85■□□□□ 0.93
LIG1-204ENST00000542460 GMLQ99445 158 aa20.85■□□□□ 0.93
LIG1-204ENST00000542460 SUGT1Q9Y2Z0 365 aa20.85■□□□□ 0.93
LIG1-204ENST00000542460 GMPSP49915 693 aaPredicted RBP20.84■□□□□ 0.93
LIG1-204ENST00000542460 DNAJC2Q99543 621 aaKnown RBP20.84■□□□□ 0.93
LIG1-204ENST00000542460 ABCF2Q9UG63 623 aa20.84■□□□□ 0.93
LIG1-204ENST00000542460 NDUFB9Q9Y6M9 179 aa20.84■□□□□ 0.93
LIG1-204ENST00000542460 TTF1Q15361 905 aaPredicted RBP20.83■□□□□ 0.93
LIG1-204ENST00000542460 SPTY2D1Q68D10 685 aaPredicted RBP20.83■□□□□ 0.93
LIG1-204ENST00000542460 TBC1D9Q6ZT07 1266 aa20.83■□□□□ 0.92
LIG1-204ENST00000542460 L3MBTL3Q96JM7 780 aaPredicted RBP20.83■□□□□ 0.92
LIG1-204ENST00000542460 PAG1Q9NWQ8 432 aa20.83■□□□□ 0.92
LIG1-204ENST00000542460 GOLIM4O00461 696 aa20.82■□□□□ 0.92
LIG1-204ENST00000542460 LDHBP07195 334 aaKnown RBP20.82■□□□□ 0.92
LIG1-204ENST00000542460 USP17L8P0C7I0 530 aa20.82■□□□□ 0.92
LIG1-204ENST00000542460 MMP14P50281 582 aa20.82■□□□□ 0.92
LIG1-204ENST00000542460 KIAA0825Q8IV33 1275 aa20.82■□□□□ 0.92
LIG1-204ENST00000542460 LRP2BPQ9P2M1 347 aa20.82■□□□□ 0.92
LIG1-204ENST00000542460 PSME4Q14997 1843 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 IGSF3O75054 1194 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 PRDX5P30044 214 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 SCNN1DP51172 638 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 ERICH6Q7L0X2 663 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 OGFOD1Q8N543 542 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 ANTXR1Q9H6X2 564 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 GPRC5DQ9NZD1 345 aa20.81■□□□□ 0.92
LIG1-204ENST00000542460 CNOT7Q9UIV1 285 aaKnown RBP20.81■□□□□ 0.92
LIG1-204ENST00000542460 F8W031 263 aaPredicted RBP20.8■□□□□ 0.92
LIG1-204ENST00000542460 LMOD1P29536 600 aaPredicted RBP20.8■□□□□ 0.92
LIG1-204ENST00000542460 GRIK5Q16478 980 aa20.8■□□□□ 0.92
LIG1-204ENST00000542460 PIH1D3Q9NQM4 214 aaKnown RBP20.8■□□□□ 0.92
LIG1-204ENST00000542460 HDAC9Q9UKV0 1011 aa20.8■□□□□ 0.92
LIG1-204ENST00000542460 TTF2Q9UNY4 1162 aaKnown RBP20.8■□□□□ 0.92
LIG1-204ENST00000542460 EDC3Q96F86 508 aaKnown RBP20.79■□□□□ 0.92
LIG1-204ENST00000542460 RAI14Q9P0K7 980 aa20.79■□□□□ 0.92
LIG1-204ENST00000542460 MAST3O60307 1309 aa20.79■□□□□ 0.92
LIG1-204ENST00000542460 AKAP11Q9UKA4 1901 aa20.79■□□□□ 0.92
LIG1-204ENST00000542460 IQCA1LA6NCM1 817 aa20.78■□□□□ 0.92
LIG1-204ENST00000542460 H7C1D1 291 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms