RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 FTSJ3Q8IY81 847 aaKnown RBP14.72□□□□□ -0.05
SYNE1-238ENST00000540663 CLUAP1Q96AJ1 413 aa14.72□□□□□ -0.05
SYNE1-238ENST00000540663 COPRSQ9NQ92 184 aa14.72□□□□□ -0.05
SYNE1-238ENST00000540663 SLC5A1P13866 664 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 IL15P40933 162 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-238ENST00000540663 ECE1P42892 770 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 DZIP1LQ8IYY4 767 aaKnown RBP14.71□□□□□ -0.05
SYNE1-238ENST00000540663 CERS5Q8N5B7 392 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 TMEM57Q8N5G2 664 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 MTMR14Q8NCE2 650 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 LPIN2Q92539 896 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 CEP126Q9P2H0 1117 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 TNNQ9UQP3 1299 aa14.71□□□□□ -0.05
SYNE1-238ENST00000540663 ASTN2O75129 1339 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-238ENST00000540663 ADM5C9JUS6 153 aa14.7□□□□□ -0.06
SYNE1-238ENST00000540663 WNT10BO00744 389 aa14.7□□□□□ -0.06
SYNE1-238ENST00000540663 SRGAP3O43295 1099 aa14.7□□□□□ -0.06
SYNE1-238ENST00000540663 SAPCD2Q86UD0 394 aa14.7□□□□□ -0.06
SYNE1-238ENST00000540663 TBC1D22AQ8WUA7 517 aa14.7□□□□□ -0.06
SYNE1-238ENST00000540663 ZBED3Q96IU2 234 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-238ENST00000540663 SIL1Q9H173 461 aa14.7□□□□□ -0.06
SYNE1-238ENST00000540663 ZNF408Q9H9D4 720 aa14.7□□□□□ -0.06
SYNE1-238ENST00000540663 FRAT2O75474 233 aaPredicted RBP14.69□□□□□ -0.06
SYNE1-238ENST00000540663 MS4A1P11836 297 aa14.69□□□□□ -0.06
SYNE1-238ENST00000540663 DLGAP5Q15398 846 aa14.69□□□□□ -0.06
SYNE1-238ENST00000540663 NBPF9Q3BBW0 867 aa14.69□□□□□ -0.06
SYNE1-238ENST00000540663 MFSD14BQ5SR56 506 aa14.69□□□□□ -0.06
SYNE1-238ENST00000540663 APOBEC3FQ8IUX4 373 aaKnown RBP14.69□□□□□ -0.06
SYNE1-238ENST00000540663 C2orf69Q8N8R5 385 aa14.69□□□□□ -0.06
SYNE1-238ENST00000540663 ARAP2Q8WZ64 1704 aa14.69□□□□□ -0.06
SYNE1-238ENST00000540663 WDR33Q9C0J8 1336 aaKnown RBP14.68□□□□□ -0.06
SYNE1-238ENST00000540663 POLR2AP24928 1970 aaKnown RBP14.68□□□□□ -0.06
SYNE1-238ENST00000540663 THSD7BQ9C0I4 1608 aa14.68□□□□□ -0.06
SYNE1-238ENST00000540663 ATP2B3Q16720 1220 aa14.68□□□□□ -0.06
SYNE1-238ENST00000540663 CDCA5Q96FF9 252 aa14.68□□□□□ -0.06
SYNE1-238ENST00000540663 CAPNS2Q96L46 248 aa14.68□□□□□ -0.06
SYNE1-238ENST00000540663 GBA2Q9HCG7 927 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-238ENST00000540663 COL1A1P02452 1464 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-238ENST00000540663 HSPA1AP0DMV8 641 aaKnown RBP14.67□□□□□ -0.06
SYNE1-238ENST00000540663 HSPA1BP0DMV9 641 aaKnown RBP14.67□□□□□ -0.06
SYNE1-238ENST00000540663 BCAMP50895 628 aa14.67□□□□□ -0.06
SYNE1-238ENST00000540663 FKBP1BP68106 108 aa14.67□□□□□ -0.06
SYNE1-238ENST00000540663 ITPRIPQ8IWB1 547 aa14.67□□□□□ -0.06
SYNE1-238ENST00000540663 SERPINA10Q9UK55 444 aa14.67□□□□□ -0.06
SYNE1-238ENST00000540663 PA2G4Q9UQ80 394 aaKnown RBP14.67□□□□□ -0.06
SYNE1-238ENST00000540663 SUGT1Q9Y2Z0 365 aa14.67□□□□□ -0.06
SYNE1-238ENST00000540663 SPDYE2BA6NHP3 402 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 F8W031 263 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-238ENST00000540663 ZBTB22O15209 634 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 MYO1BO43795 1136 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 SPDYE6P0CI01 402 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 HUNKP57058 714 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 CFAP100Q494V2 611 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 PAXIP1Q6ZW49 1069 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-238ENST00000540663 GNL3LQ9NVN8 582 aaKnown RBP14.66□□□□□ -0.06
SYNE1-238ENST00000540663 JAG2Q9Y219 1238 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 AKAP2Q9Y2D5 859 aa14.66□□□□□ -0.06
SYNE1-238ENST00000540663 RLBP1P12271 317 aa14.65□□□□□ -0.06
SYNE1-238ENST00000540663 MAP2K2P36507 400 aa14.65□□□□□ -0.06
SYNE1-238ENST00000540663 HDLBPQ00341 1268 aaKnown RBP14.65□□□□□ -0.06
SYNE1-238ENST00000540663 MAP2K1Q02750 393 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-238ENST00000540663 CHAF1AQ13111 956 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-238ENST00000540663 CYP4F22Q6NT55 531 aa14.65□□□□□ -0.06
SYNE1-238ENST00000540663 DLK2Q6UY11 383 aa14.65□□□□□ -0.06
SYNE1-238ENST00000540663 TTF2Q9UNY4 1162 aaKnown RBP14.65□□□□□ -0.06
SYNE1-238ENST00000540663 IQSEC3Q9UPP2 1182 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-238ENST00000540663 PPP2R3BQ9Y5P8 575 aa14.65□□□□□ -0.06
SYNE1-238ENST00000540663 PAPPA2Q9BXP8 1791 aa14.65□□□□□ -0.06
SYNE1-238ENST00000540663 MAST3O60307 1309 aa14.65□□□□□ -0.06
SYNE1-238ENST00000540663 ECM29Q5VYK3 1845 aa14.64□□□□□ -0.07
SYNE1-238ENST00000540663 SEMA3EO15041 775 aa14.64□□□□□ -0.07
SYNE1-238ENST00000540663 ZBTB7BO15156 539 aaPredicted RBP14.64□□□□□ -0.07
SYNE1-238ENST00000540663 NF2P35240 595 aa14.64□□□□□ -0.07
SYNE1-238ENST00000540663 WDR66Q8TBY9 1149 aa14.64□□□□□ -0.07
SYNE1-238ENST00000540663 AIDAQ96BJ3 306 aa14.64□□□□□ -0.07
SYNE1-238ENST00000540663 RCAN3Q9UKA8 241 aa14.64□□□□□ -0.07
SYNE1-238ENST00000540663 PNMA6EA0A0J9YXQ4 647 aa14.63□□□□□ -0.07
SYNE1-238ENST00000540663 RBM5P52756 815 aaKnown RBP eCLIP14.63□□□□□ -0.07
SYNE1-238ENST00000540663 NOGQ13253 232 aa14.63□□□□□ -0.07
SYNE1-238ENST00000540663 G3BP1Q13283 466 aaKnown RBP eCLIP14.63□□□□□ -0.07
SYNE1-238ENST00000540663 POLA2Q14181 598 aa14.63□□□□□ -0.07
SYNE1-238ENST00000540663 SSH3Q8TE77 659 aa14.63□□□□□ -0.07
SYNE1-238ENST00000540663 CCDC102AQ96A19 550 aa14.63□□□□□ -0.07
SYNE1-238ENST00000540663 MRIQ9BWK5 157 aa14.63□□□□□ -0.07
SYNE1-238ENST00000540663 WBP1LQ9NX94 342 aa14.63□□□□□ -0.07
SYNE1-238ENST00000540663 CRKP46108 304 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 ATP8B2P98198 1209 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 TFCP2Q12800 502 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 GRM1Q13255 1194 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 MVPQ14764 893 aaKnown RBP14.62□□□□□ -0.07
SYNE1-238ENST00000540663 RGMBQ6NW40 437 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 TEKT1Q969V4 418 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 PRMT6Q96LA8 375 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-238ENST00000540663 DEFB129Q9H1M3 183 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 DENND2AQ9ULE3 1009 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 MYH13Q9UKX3 1938 aa14.62□□□□□ -0.07
SYNE1-238ENST00000540663 PDS5AQ29RF7 1337 aaKnown RBP14.62□□□□□ -0.07
SYNE1-238ENST00000540663 TNFAIP1Q13829 316 aa14.61□□□□□ -0.07
SYNE1-238ENST00000540663 SPDYE2Q495Y8 402 aa14.61□□□□□ -0.07
SYNE1-238ENST00000540663 PANK1Q8TE04 598 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms