RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 SCN4AP35499 1836 aa15.98■□□□□ 0.15
CCDC42-202ENST00000539522 NUCB1Q02818 461 aa15.98■□□□□ 0.15
CCDC42-202ENST00000539522 CIAPIN1Q6FI81 312 aa15.98■□□□□ 0.15
CCDC42-202ENST00000539522 GPC2Q8N158 579 aa15.98■□□□□ 0.15
CCDC42-202ENST00000539522 L3MBTL3Q96JM7 780 aaPredicted RBP15.98■□□□□ 0.15
CCDC42-202ENST00000539522 HMG20BQ9P0W2 317 aa15.98■□□□□ 0.15
CCDC42-202ENST00000539522 NDUFB9Q9Y6M9 179 aa15.98■□□□□ 0.15
CCDC42-202ENST00000539522 USP17L3A6NCW0 530 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 USP17L4A6NCW7 530 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 PDE4AP27815 886 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 GMPSP49915 693 aaPredicted RBP15.97■□□□□ 0.15
CCDC42-202ENST00000539522 EIF6P56537 245 aaKnown RBP15.97■□□□□ 0.15
CCDC42-202ENST00000539522 CAVIN4Q5BKX8 364 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 ANKRD45Q5TZF3 282 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 STRIP1Q5VSL9 837 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 TSHZ3Q63HK5 1081 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 USP17L1Q7RTZ2 530 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 SKAP1Q86WV1 359 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 CLASRPQ8N2M8 674 aaKnown RBP15.97■□□□□ 0.15
CCDC42-202ENST00000539522 ZNF512BQ96KM6 892 aaPredicted RBP15.97■□□□□ 0.15
CCDC42-202ENST00000539522 GJA3Q9Y6H8 435 aa15.97■□□□□ 0.15
CCDC42-202ENST00000539522 EGFRP00533 1210 aa15.96■□□□□ 0.15
CCDC42-202ENST00000539522 TTLL5Q6EMB2 1281 aa15.96■□□□□ 0.15
CCDC42-202ENST00000539522 RSBN1LQ6PCB5 846 aaPredicted RBP15.96■□□□□ 0.15
CCDC42-202ENST00000539522 ZNF384Q8TF68 577 aa15.96■□□□□ 0.15
CCDC42-202ENST00000539522 BCL11AQ9H165 835 aa15.96■□□□□ 0.15
CCDC42-202ENST00000539522 NMRK2Q9NPI5 230 aa15.96■□□□□ 0.15
CCDC42-202ENST00000539522 YY1P25490 414 aa15.95■□□□□ 0.14
CCDC42-202ENST00000539522 ZNF526Q8TF50 670 aaPredicted RBP15.95■□□□□ 0.14
CCDC42-202ENST00000539522 LNPKQ9C0E8 428 aa15.95■□□□□ 0.14
CCDC42-202ENST00000539522 PCDHAC2Q9Y5I4 1007 aa15.95■□□□□ 0.14
CCDC42-202ENST00000539522 AOX1Q06278 1338 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 PDS5AQ29RF7 1337 aaKnown RBP15.94■□□□□ 0.14
CCDC42-202ENST00000539522 G3V3G9 751 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 EPS15P42566 896 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 CHAF1AQ13111 956 aaPredicted RBP15.94■□□□□ 0.14
CCDC42-202ENST00000539522 DCAF8Q5TAQ9 597 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 CHD1LQ86WJ1 897 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 VPS37DQ86XT2 251 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 ZNF784Q8NCA9 323 aaPredicted RBP15.94■□□□□ 0.14
CCDC42-202ENST00000539522 PI4K2BQ8TCG2 481 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 SNRKQ9NRH2 765 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 GPRC5DQ9NZD1 345 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 MAST2Q6P0Q8 1798 aa15.94■□□□□ 0.14
CCDC42-202ENST00000539522 SEMA3EO15041 775 aa15.93■□□□□ 0.14
CCDC42-202ENST00000539522 CYP2E1P05181 493 aaPredicted RBP15.93■□□□□ 0.14
CCDC42-202ENST00000539522 IFIT2P09913 472 aaKnown RBP15.93■□□□□ 0.14
CCDC42-202ENST00000539522 ZAP70P43403 619 aa15.93■□□□□ 0.14
CCDC42-202ENST00000539522 FKBP1AP62942 108 aaKnown RBP15.93■□□□□ 0.14
CCDC42-202ENST00000539522 TNIP1Q15025 636 aa15.93■□□□□ 0.14
CCDC42-202ENST00000539522 TBC1D9Q6ZT07 1266 aa15.93■□□□□ 0.14
CCDC42-202ENST00000539522 SPATA5Q8NB90 893 aa15.93■□□□□ 0.14
CCDC42-202ENST00000539522 EDC3Q96F86 508 aaKnown RBP15.93■□□□□ 0.14
CCDC42-202ENST00000539522 ANTXR1Q9H6X2 564 aa15.93■□□□□ 0.14
CCDC42-202ENST00000539522 SALL1Q9NSC2 1324 aa15.93■□□□□ 0.14
CCDC42-202ENST00000539522 ATP5JP18859 108 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 PRDX5P30044 214 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 HIRAP54198 1017 aaPredicted RBP15.92■□□□□ 0.14
CCDC42-202ENST00000539522 ZNF280AP59817 542 aaPredicted RBP15.92■□□□□ 0.14
CCDC42-202ENST00000539522 MFSD14BQ5SR56 506 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 TTC39AQ5SRH9 613 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 AGBL3Q8NEM8 1001 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 DPF2Q92785 391 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 FBXW7Q969H0 707 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 RRAGCQ9HB90 399 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 PIH1D3Q9NQM4 214 aaKnown RBP15.92■□□□□ 0.14
CCDC42-202ENST00000539522 DENND2AQ9ULE3 1009 aa15.92■□□□□ 0.14
CCDC42-202ENST00000539522 ECM29Q5VYK3 1845 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 KIF3CO14782 793 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 UQCRFS1P1P0C7P4 283 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 POTEIP0CG38 1075 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 POTEJP0CG39 1038 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 CCDC158Q5M9N0 1113 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 GORABQ5T7V8 394 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 DPY19L2Q6NUT2 758 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 KIAA0825Q8IV33 1275 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 PLEKHM2Q8IWE5 1019 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 MICALL2Q8IY33 904 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 TRPM4Q8TD43 1214 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.91■□□□□ 0.14
CCDC42-202ENST00000539522 STAP2Q9UGK3 403 aa15.91■□□□□ 0.14
CCDC42-202ENST00000539522 CNOT7Q9UIV1 285 aaKnown RBP15.91■□□□□ 0.14
CCDC42-202ENST00000539522 MYH2Q9UKX2 1941 aa15.9■□□□□ 0.14
CCDC42-202ENST00000539522 CHGBP05060 677 aa15.9■□□□□ 0.14
CCDC42-202ENST00000539522 RPS12P25398 132 aaKnown RBP15.9■□□□□ 0.14
CCDC42-202ENST00000539522 SAMD7Q7Z3H4 446 aa15.9■□□□□ 0.14
CCDC42-202ENST00000539522 ZBED3Q96IU2 234 aaPredicted RBP15.9■□□□□ 0.14
CCDC42-202ENST00000539522 TAF1DQ9H5J8 278 aaPredicted RBP15.9■□□□□ 0.14
CCDC42-202ENST00000539522 ECHDC1Q9NTX5 307 aa15.9■□□□□ 0.14
CCDC42-202ENST00000539522 GNL3LQ9NVN8 582 aaKnown RBP15.9■□□□□ 0.14
CCDC42-202ENST00000539522 ASTN2O75129 1339 aaPredicted RBP15.9■□□□□ 0.14
CCDC42-202ENST00000539522 MYH7P12883 1935 aa15.9■□□□□ 0.14
CCDC42-202ENST00000539522 F8W031 263 aaPredicted RBP15.89■□□□□ 0.13
CCDC42-202ENST00000539522 MX1P20591 662 aa15.89■□□□□ 0.13
CCDC42-202ENST00000539522 PDE1AP54750 535 aa15.89■□□□□ 0.13
CCDC42-202ENST00000539522 CENPQQ7L2Z9 268 aaPredicted RBP15.89■□□□□ 0.13
CCDC42-202ENST00000539522 WDR66Q8TBY9 1149 aa15.89■□□□□ 0.13
CCDC42-202ENST00000539522 HAUS7Q99871 368 aa15.89■□□□□ 0.13
CCDC42-202ENST00000539522 BOLA2Q9H3K6 86 aa15.89■□□□□ 0.13
CCDC42-202ENST00000539522 FRAT2O75474 233 aaPredicted RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms