RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 TBC1D16Q8TBP0 767 aa12.93□□□□□ -0.34
LEMD3-202ENST00000539442 C7orf43Q8WVR3 580 aa12.93□□□□□ -0.34
LEMD3-202ENST00000539442 FAM84BQ96KN1 310 aaPredicted RBP12.93□□□□□ -0.34
LEMD3-202ENST00000539442 DNAJC2Q99543 621 aaKnown RBP12.93□□□□□ -0.34
LEMD3-202ENST00000539442 PAG1Q9NWQ8 432 aa12.93□□□□□ -0.34
LEMD3-202ENST00000539442 KIAA1551Q9HCM1 1747 aa12.93□□□□□ -0.34
LEMD3-202ENST00000539442 MED23Q9ULK4 1368 aa12.93□□□□□ -0.34
LEMD3-202ENST00000539442 PDS5AQ29RF7 1337 aaKnown RBP12.92□□□□□ -0.34
LEMD3-202ENST00000539442 A0A0G2JLW4 131 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 MAP4K4O95819 1239 aaPredicted RBP12.92□□□□□ -0.34
LEMD3-202ENST00000539442 HIBADHP31937 336 aaKnown RBP12.92□□□□□ -0.34
LEMD3-202ENST00000539442 MCAMP43121 646 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 BCAMP50895 628 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 TTF1Q15361 905 aaPredicted RBP12.92□□□□□ -0.34
LEMD3-202ENST00000539442 SOGA3Q5TF21 947 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 DPP8Q6V1X1 898 aaPredicted RBP12.92□□□□□ -0.34
LEMD3-202ENST00000539442 TBC1D9Q6ZT07 1266 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 ZNF804AQ7Z570 1209 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 VPS37DQ86XT2 251 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 KBTBD3Q8NAB2 608 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 PIM2Q9P1W9 311 aa12.92□□□□□ -0.34
LEMD3-202ENST00000539442 DUOX1Q9NRD9 1551 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 SNED1Q8TER0 1413 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 KLRK1P26718 216 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 GYG1P46976 350 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 RASGRF1Q13972 1273 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 SCARF1Q14162 830 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 LRRFIP1Q32MZ4 808 aaKnown RBP12.91□□□□□ -0.34
LEMD3-202ENST00000539442 SLC51AQ86UW1 340 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 SPATA5Q8NB90 893 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 EYA3Q99504 573 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 FSD1Q9BTV5 496 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 RTFDC1Q9BY42 306 aaPredicted RBP12.91□□□□□ -0.34
LEMD3-202ENST00000539442 POLLQ9UGP5 575 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 DENND2AQ9ULE3 1009 aa12.91□□□□□ -0.34
LEMD3-202ENST00000539442 SLX4Q8IY92 1834 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 WTIPA6NIX2 430 aaPredicted RBP12.9□□□□□ -0.34
LEMD3-202ENST00000539442 C6orf229H3BNL8 230 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 GOLIM4O00461 696 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 ST18O60284 1047 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 CHMLP26374 656 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 ZAP70P43403 619 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 ATN1P54259 1190 aaPredicted RBP12.9□□□□□ -0.34
LEMD3-202ENST00000539442 FKBP4Q02790 459 aaKnown RBP eCLIP12.9□□□□□ -0.34
LEMD3-202ENST00000539442 CCDC93Q567U6 631 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 SUPT20HQ8NEM7 779 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 HMG20BQ9P0W2 317 aa12.9□□□□□ -0.34
LEMD3-202ENST00000539442 IGSF3O75054 1194 aa12.89□□□□□ -0.35
LEMD3-202ENST00000539442 DALRD3Q5D0E6 543 aaKnown RBP12.89□□□□□ -0.35
LEMD3-202ENST00000539442 TXNRD3Q86VQ6 643 aa12.89□□□□□ -0.35
LEMD3-202ENST00000539442 RTKN2Q8IZC4 609 aa12.89□□□□□ -0.35
LEMD3-202ENST00000539442 RUFY2Q8WXA3 655 aa12.89□□□□□ -0.35
LEMD3-202ENST00000539442 EDC3Q96F86 508 aaKnown RBP12.89□□□□□ -0.35
LEMD3-202ENST00000539442 DIAPH3Q9NSV4 1193 aa12.89□□□□□ -0.35
LEMD3-202ENST00000539442 PPP1R1BQ9UD71 204 aaPredicted RBP12.89□□□□□ -0.35
LEMD3-202ENST00000539442 RAD50Q92878 1312 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 C21orf2O43822 256 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 CYP2E1P05181 493 aaPredicted RBP12.88□□□□□ -0.35
LEMD3-202ENST00000539442 ZFYP08048 801 aaPredicted RBP12.88□□□□□ -0.35
LEMD3-202ENST00000539442 IL1R1P14778 569 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 OLFM4Q6UX06 510 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 PI16Q6UXB8 463 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 KLHL34Q8N239 644 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 TDRD7Q8NHU6 1098 aaKnown RBP12.88□□□□□ -0.35
LEMD3-202ENST00000539442 PSMD1Q99460 953 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 ZC3H12CQ9C0D7 883 aaKnown RBP12.88□□□□□ -0.35
LEMD3-202ENST00000539442 COA1Q9GZY4 146 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 SNRKQ9NRH2 765 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 NDUFB9Q9Y6M9 179 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 CACNA1SQ13698 1873 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 AK9Q5TCS8 1911 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 AKAP11Q9UKA4 1901 aa12.88□□□□□ -0.35
LEMD3-202ENST00000539442 COL1A1P02452 1464 aaPredicted RBP12.87□□□□□ -0.35
LEMD3-202ENST00000539442 FRAT2O75474 233 aaPredicted RBP12.87□□□□□ -0.35
LEMD3-202ENST00000539442 WASHC4Q2M389 1173 aa12.87□□□□□ -0.35
LEMD3-202ENST00000539442 ZSCAN25Q6NSZ9 544 aa12.87□□□□□ -0.35
LEMD3-202ENST00000539442 GPR101Q96P66 508 aaPredicted RBP12.87□□□□□ -0.35
LEMD3-202ENST00000539442 ESYT1Q9BSJ8 1104 aa12.87□□□□□ -0.35
LEMD3-202ENST00000539442 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.87□□□□□ -0.35
LEMD3-202ENST00000539442 VPS33BQ9H267 617 aa12.87□□□□□ -0.35
LEMD3-202ENST00000539442 ANTXR1Q9H6X2 564 aa12.87□□□□□ -0.35
LEMD3-202ENST00000539442 UPF2Q9HAU5 1272 aaKnown RBP12.87□□□□□ -0.35
LEMD3-202ENST00000539442 CD209Q9NNX6 404 aa12.87□□□□□ -0.35
LEMD3-202ENST00000539442 BRCA1P38398 1863 aaKnown RBP12.87□□□□□ -0.35
LEMD3-202ENST00000539442 SALL1Q9NSC2 1324 aa12.87□□□□□ -0.35
LEMD3-202ENST00000539442 SOCS7O14512 581 aa12.86□□□□□ -0.35
LEMD3-202ENST00000539442 EPB41L2O43491 1005 aaKnown RBP12.86□□□□□ -0.35
LEMD3-202ENST00000539442 REC8O95072 547 aa12.86□□□□□ -0.35
LEMD3-202ENST00000539442 TMED8Q6PL24 325 aaPredicted RBP12.86□□□□□ -0.35
LEMD3-202ENST00000539442 ZGPATQ8N5A5 531 aaKnown RBP12.86□□□□□ -0.35
LEMD3-202ENST00000539442 WDR66Q8TBY9 1149 aa12.86□□□□□ -0.35
LEMD3-202ENST00000539442 IQSEC3Q9UPP2 1182 aaPredicted RBP12.86□□□□□ -0.35
LEMD3-202ENST00000539442 RNF113AO15541 343 aaKnown RBP12.85□□□□□ -0.35
LEMD3-202ENST00000539442 SGSM2O43147 1006 aa12.85□□□□□ -0.35
LEMD3-202ENST00000539442 SEC24BO95487 1268 aa12.85□□□□□ -0.35
LEMD3-202ENST00000539442 MFAP1P55081 439 aaKnown RBP12.85□□□□□ -0.35
LEMD3-202ENST00000539442 KIAA2012Q0VF49 1180 aa12.85□□□□□ -0.35
LEMD3-202ENST00000539442 MAP3K12Q12852 859 aa12.85□□□□□ -0.35
LEMD3-202ENST00000539442 PIH1D3Q9NQM4 214 aaKnown RBP12.85□□□□□ -0.35
LEMD3-202ENST00000539442 IDH1O75874 414 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms