RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 GYG1P46976 350 aa23.71■■□□□ 1.39
CLIP1-211ENST00000539080 PUM3Q15397 648 aaKnown RBP23.71■■□□□ 1.39
CLIP1-211ENST00000539080 CAVIN4Q5BKX8 364 aa23.71■■□□□ 1.39
CLIP1-211ENST00000539080 CERS5Q8N5B7 392 aa23.71■■□□□ 1.39
CLIP1-211ENST00000539080 NBPF9Q3BBW0 867 aa23.7■■□□□ 1.38
CLIP1-211ENST00000539080 FBXO33Q7Z6M2 555 aa23.7■■□□□ 1.38
CLIP1-211ENST00000539080 VPS37DQ86XT2 251 aa23.7■■□□□ 1.38
CLIP1-211ENST00000539080 CAPNS2Q96L46 248 aa23.7■■□□□ 1.38
CLIP1-211ENST00000539080 ARAP2Q8WZ64 1704 aa23.7■■□□□ 1.38
CLIP1-211ENST00000539080 IFIT1P09914 478 aaKnown RBP23.69■■□□□ 1.38
CLIP1-211ENST00000539080 ATG9AQ7Z3C6 839 aa23.69■■□□□ 1.38
CLIP1-211ENST00000539080 MTMR14Q8NCE2 650 aa23.69■■□□□ 1.38
CLIP1-211ENST00000539080 ZBED3Q96IU2 234 aaPredicted RBP23.69■■□□□ 1.38
CLIP1-211ENST00000539080 GBA2Q9HCG7 927 aaPredicted RBP23.69■■□□□ 1.38
CLIP1-211ENST00000539080 FGFR2P21802 821 aa23.68■■□□□ 1.38
CLIP1-211ENST00000539080 MTX1Q13505 466 aa23.68■■□□□ 1.38
CLIP1-211ENST00000539080 PAXIP1Q6ZW49 1069 aaPredicted RBP23.68■■□□□ 1.38
CLIP1-211ENST00000539080 C2orf69Q8N8R5 385 aa23.68■■□□□ 1.38
CLIP1-211ENST00000539080 CDCA5Q96FF9 252 aa23.68■■□□□ 1.38
CLIP1-211ENST00000539080 CYP4F22Q6NT55 531 aa23.67■■□□□ 1.38
CLIP1-211ENST00000539080 DLK2Q6UY11 383 aa23.67■■□□□ 1.38
CLIP1-211ENST00000539080 LPIN2Q92539 896 aa23.67■■□□□ 1.38
CLIP1-211ENST00000539080 CLUAP1Q96AJ1 413 aa23.67■■□□□ 1.38
CLIP1-211ENST00000539080 COPRSQ9NQ92 184 aa23.67■■□□□ 1.38
CLIP1-211ENST00000539080 ECM29Q5VYK3 1845 aa23.67■■□□□ 1.38
CLIP1-211ENST00000539080 PCNTO95613 3336 aa23.67■■□□□ 1.38
CLIP1-211ENST00000539080 IL15P40933 162 aaPredicted RBP23.66■■□□□ 1.38
CLIP1-211ENST00000539080 MAP2K1Q02750 393 aaPredicted RBP23.66■■□□□ 1.38
CLIP1-211ENST00000539080 DLGAP5Q15398 846 aa23.66■■□□□ 1.38
CLIP1-211ENST00000539080 MFSD14BQ5SR56 506 aa23.66■■□□□ 1.38
CLIP1-211ENST00000539080 TNNQ9UQP3 1299 aa23.66■■□□□ 1.38
CLIP1-211ENST00000539080 GNAI2P04899 355 aa23.65■■□□□ 1.38
CLIP1-211ENST00000539080 SLC5A1P13866 664 aa23.65■■□□□ 1.38
CLIP1-211ENST00000539080 MAP2K2P36507 400 aa23.65■■□□□ 1.38
CLIP1-211ENST00000539080 HUNKP57058 714 aa23.65■■□□□ 1.38
CLIP1-211ENST00000539080 FKBP1BP68106 108 aa23.65■■□□□ 1.38
CLIP1-211ENST00000539080 APOBEC3FQ8IUX4 373 aaKnown RBP23.65■■□□□ 1.38
CLIP1-211ENST00000539080 SIL1Q9H173 461 aa23.65■■□□□ 1.38
CLIP1-211ENST00000539080 CEP126Q9P2H0 1117 aa23.65■■□□□ 1.38
CLIP1-211ENST00000539080 COL1A1P02452 1464 aaPredicted RBP23.64■■□□□ 1.38
CLIP1-211ENST00000539080 SRGAP3O43295 1099 aa23.64■■□□□ 1.37
CLIP1-211ENST00000539080 TMEM57Q8N5G2 664 aa23.64■■□□□ 1.37
CLIP1-211ENST00000539080 TBC1D22AQ8WUA7 517 aa23.64■■□□□ 1.37
CLIP1-211ENST00000539080 WBP1LQ9NX94 342 aa23.64■■□□□ 1.37
CLIP1-211ENST00000539080 JAG2Q9Y219 1238 aa23.64■■□□□ 1.37
CLIP1-211ENST00000539080 PAPPA2Q9BXP8 1791 aa23.63■■□□□ 1.37
CLIP1-211ENST00000539080 F8W031 263 aaPredicted RBP23.63■■□□□ 1.37
CLIP1-211ENST00000539080 FRAT2O75474 233 aaPredicted RBP23.63■■□□□ 1.37
CLIP1-211ENST00000539080 AIDAQ96BJ3 306 aa23.63■■□□□ 1.37
CLIP1-211ENST00000539080 MYO1BO43795 1136 aa23.62■■□□□ 1.37
CLIP1-211ENST00000539080 BCAMP50895 628 aa23.62■■□□□ 1.37
CLIP1-211ENST00000539080 CFAP100Q494V2 611 aa23.62■■□□□ 1.37
CLIP1-211ENST00000539080 FTSJ3Q8IY81 847 aaKnown RBP23.62■■□□□ 1.37
CLIP1-211ENST00000539080 DZIP1LQ8IYY4 767 aaKnown RBP23.62■■□□□ 1.37
CLIP1-211ENST00000539080 SERPINA10Q9UK55 444 aa23.62■■□□□ 1.37
CLIP1-211ENST00000539080 PA2G4Q9UQ80 394 aaKnown RBP23.62■■□□□ 1.37
CLIP1-211ENST00000539080 SPDYE2BA6NHP3 402 aa23.61■■□□□ 1.37
CLIP1-211ENST00000539080 SPDYE6P0CI01 402 aa23.61■■□□□ 1.37
CLIP1-211ENST00000539080 GRM1Q13255 1194 aa23.61■■□□□ 1.37
CLIP1-211ENST00000539080 ATP2B3Q16720 1220 aa23.61■■□□□ 1.37
CLIP1-211ENST00000539080 RGMBQ6NW40 437 aa23.61■■□□□ 1.37
CLIP1-211ENST00000539080 MYH13Q9UKX3 1938 aa23.61■■□□□ 1.37
CLIP1-211ENST00000539080 NF2P35240 595 aa23.6■■□□□ 1.37
CLIP1-211ENST00000539080 TTF2Q9UNY4 1162 aaKnown RBP23.6■■□□□ 1.37
CLIP1-211ENST00000539080 IQSEC3Q9UPP2 1182 aaPredicted RBP23.6■■□□□ 1.37
CLIP1-211ENST00000539080 NOGQ13253 232 aa23.59■■□□□ 1.37
CLIP1-211ENST00000539080 CCDC102AQ96A19 550 aa23.59■■□□□ 1.37
CLIP1-211ENST00000539080 SUGT1Q9Y2Z0 365 aa23.59■■□□□ 1.37
CLIP1-211ENST00000539080 PPP2R3BQ9Y5P8 575 aa23.59■■□□□ 1.37
CLIP1-211ENST00000539080 ZBTB22O15209 634 aa23.58■■□□□ 1.37
CLIP1-211ENST00000539080 FOXN1O15353 648 aa23.58■■□□□ 1.37
CLIP1-211ENST00000539080 CTCFP49711 727 aaPredicted RBP23.58■■□□□ 1.37
CLIP1-211ENST00000539080 RBM5P52756 815 aaKnown RBP eCLIP23.58■■□□□ 1.37
CLIP1-211ENST00000539080 HDLBPQ00341 1268 aaKnown RBP23.58■■□□□ 1.37
CLIP1-211ENST00000539080 CHAF1AQ13111 956 aaPredicted RBP23.58■■□□□ 1.37
CLIP1-211ENST00000539080 PRMT6Q96LA8 375 aaPredicted RBP23.58■■□□□ 1.37
CLIP1-211ENST00000539080 SCAF8Q9UPN6 1271 aaKnown RBP23.58■■□□□ 1.37
CLIP1-211ENST00000539080 AOC2O75106 756 aa23.57■■□□□ 1.36
CLIP1-211ENST00000539080 BEGAINQ9BUH8 593 aa23.57■■□□□ 1.36
CLIP1-211ENST00000539080 MRIQ9BWK5 157 aa23.57■■□□□ 1.36
CLIP1-211ENST00000539080 GNL3LQ9NVN8 582 aaKnown RBP23.57■■□□□ 1.36
CLIP1-211ENST00000539080 AKAP2Q9Y2D5 859 aa23.57■■□□□ 1.36
CLIP1-211ENST00000539080 ITPRIPQ8IWB1 547 aa23.56■■□□□ 1.36
CLIP1-211ENST00000539080 WDR66Q8TBY9 1149 aa23.56■■□□□ 1.36
CLIP1-211ENST00000539080 DEFB129Q9H1M3 183 aa23.56■■□□□ 1.36
CLIP1-211ENST00000539080 PCDHAC2Q9Y5I4 1007 aa23.56■■□□□ 1.36
CLIP1-211ENST00000539080 MAST3O60307 1309 aa23.56■■□□□ 1.36
CLIP1-211ENST00000539080 FAM155AB1AL88 458 aaPredicted RBP23.55■■□□□ 1.36
CLIP1-211ENST00000539080 SEMA3EO15041 775 aa23.55■■□□□ 1.36
CLIP1-211ENST00000539080 MS4A1P11836 297 aa23.55■■□□□ 1.36
CLIP1-211ENST00000539080 ZNF157P51786 506 aaPredicted RBP23.55■■□□□ 1.36
CLIP1-211ENST00000539080 COL13A1Q5TAT6 717 aaPredicted RBP23.55■■□□□ 1.36
CLIP1-211ENST00000539080 PRAMEF18Q5VWM3 479 aa23.55■■□□□ 1.36
CLIP1-211ENST00000539080 PNMA6EA0A0J9YXQ4 647 aa23.54■■□□□ 1.36
CLIP1-211ENST00000539080 RLBP1P12271 317 aa23.54■■□□□ 1.36
CLIP1-211ENST00000539080 CRKP46108 304 aa23.54■■□□□ 1.36
CLIP1-211ENST00000539080 TNFAIP1Q13829 316 aa23.54■■□□□ 1.36
CLIP1-211ENST00000539080 PRDM10Q9NQV6 1147 aa23.54■■□□□ 1.36
CLIP1-211ENST00000539080 CLRN2A0PK11 232 aa23.53■■□□□ 1.36
CLIP1-211ENST00000539080 ZBTB7BO15156 539 aaPredicted RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms