RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 ZSCAN25Q6NSZ9 544 aa11.37□□□□□ -0.59
CIITA-203ENST00000537380 SLC51AQ86UW1 340 aa11.37□□□□□ -0.59
CIITA-203ENST00000537380 HELBQ8NG08 1087 aaPredicted RBP11.37□□□□□ -0.59
CIITA-203ENST00000537380 USP26Q9BXU7 913 aa11.37□□□□□ -0.59
CIITA-203ENST00000537380 DIAPH3Q9NSV4 1193 aa11.37□□□□□ -0.59
CIITA-203ENST00000537380 COL4A5P29400 1685 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 TAF5LO75529 589 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 MCAMP43121 646 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 PHKA1P46020 1223 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 FAM84BQ96KN1 310 aaPredicted RBP11.36□□□□□ -0.59
CIITA-203ENST00000537380 FSD1Q9BTV5 496 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 RTFDC1Q9BY42 306 aaPredicted RBP11.36□□□□□ -0.59
CIITA-203ENST00000537380 C22orf23Q9BZE7 217 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.36□□□□□ -0.59
CIITA-203ENST00000537380 BCL11AQ9H165 835 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 HELLSQ9NRZ9 838 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 DENND2AQ9ULE3 1009 aa11.36□□□□□ -0.59
CIITA-203ENST00000537380 WDR90Q96KV7 1748 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 ANP32AP39687 249 aaKnown RBP11.35□□□□□ -0.59
CIITA-203ENST00000537380 KCNJ4P48050 445 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 MFAP1P55081 439 aaKnown RBP11.35□□□□□ -0.59
CIITA-203ENST00000537380 ANAPC15P60006 121 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 SPATA5Q8NB90 893 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 RBM46Q8TBY0 533 aaKnown RBP11.35□□□□□ -0.59
CIITA-203ENST00000537380 TMX4Q9H1E5 349 aaPredicted RBP11.35□□□□□ -0.59
CIITA-203ENST00000537380 RRAGCQ9HB90 399 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 NMRK2Q9NPI5 230 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 HMG20BQ9P0W2 317 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 GGA1Q9UJY5 639 aa11.35□□□□□ -0.59
CIITA-203ENST00000537380 MED23Q9ULK4 1368 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 GOLIM4O00461 696 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 RNF113AO15541 343 aaKnown RBP11.34□□□□□ -0.59
CIITA-203ENST00000537380 HIBADHP31937 336 aaKnown RBP11.34□□□□□ -0.59
CIITA-203ENST00000537380 ZAP70P43403 619 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 FSTL1Q12841 308 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 RASGRF1Q13972 1273 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 UBE3CQ15386 1083 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 ZMYM1Q5SVZ6 1142 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 DNAJC2Q99543 621 aaKnown RBP11.34□□□□□ -0.59
CIITA-203ENST00000537380 ZNF277Q9NRM2 450 aaPredicted RBP11.34□□□□□ -0.59
CIITA-203ENST00000537380 ANKIB1Q9P2G1 1089 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 SALL1Q9NSC2 1324 aa11.34□□□□□ -0.59
CIITA-203ENST00000537380 DOCK2Q92608 1830 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 GLTPD2A6NH11 291 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 MAP4K4O95819 1239 aaPredicted RBP11.33□□□□□ -0.6
CIITA-203ENST00000537380 CYP2E1P05181 493 aaPredicted RBP11.33□□□□□ -0.6
CIITA-203ENST00000537380 IARSP41252 1262 aaKnown RBP11.33□□□□□ -0.6
CIITA-203ENST00000537380 BCAMP50895 628 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 GPSM2P81274 684 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 SCARF1Q14162 830 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 MCMDC2Q4G0Z9 681 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 KIAA1211Q6ZU35 1233 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 ZNF804AQ7Z570 1209 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 VPS37DQ86XT2 251 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 SMC1BQ8NDV3 1235 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 DDRGK1Q96HY6 314 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 VPS33BQ9H267 617 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 MYH7P12883 1935 aa11.33□□□□□ -0.6
CIITA-203ENST00000537380 IL1R1P14778 569 aa11.32□□□□□ -0.6
CIITA-203ENST00000537380 VEGFAP15692 232 aaPredicted RBP11.32□□□□□ -0.6
CIITA-203ENST00000537380 MCCP23508 829 aa11.32□□□□□ -0.6
CIITA-203ENST00000537380 MAP3K12Q12852 859 aa11.32□□□□□ -0.6
CIITA-203ENST00000537380 CWC27Q6UX04 472 aaKnown RBP11.32□□□□□ -0.6
CIITA-203ENST00000537380 MPNDQ8N594 471 aa11.32□□□□□ -0.6
CIITA-203ENST00000537380 ZGPATQ8N5A5 531 aaKnown RBP11.32□□□□□ -0.6
CIITA-203ENST00000537380 TDRD7Q8NHU6 1098 aaKnown RBP11.32□□□□□ -0.6
CIITA-203ENST00000537380 TBC1D16Q8TBP0 767 aa11.32□□□□□ -0.6
CIITA-203ENST00000537380 APPBP2Q92624 585 aa11.32□□□□□ -0.6
CIITA-203ENST00000537380 KCNB2Q92953 911 aa11.32□□□□□ -0.6
CIITA-203ENST00000537380 LSG1Q9H089 658 aaKnown RBP11.32□□□□□ -0.6
CIITA-203ENST00000537380 SCN4AP35499 1836 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 FZD9O00144 591 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 SNAP23O00161 211 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 ADD2P35612 726 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 GYG1P46976 350 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 NMIQ13287 307 aaPredicted RBP11.31□□□□□ -0.6
CIITA-203ENST00000537380 SPTY2D1Q68D10 685 aaPredicted RBP11.31□□□□□ -0.6
CIITA-203ENST00000537380 DPP8Q6V1X1 898 aaPredicted RBP11.31□□□□□ -0.6
CIITA-203ENST00000537380 SUPT20HQ8NEM7 779 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 WDR66Q8TBY9 1149 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 MAP4K1Q92918 833 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 EDC3Q96F86 508 aaKnown RBP11.31□□□□□ -0.6
CIITA-203ENST00000537380 EYA3Q99504 573 aa11.31□□□□□ -0.6
CIITA-203ENST00000537380 NSFL1CQ9UNZ2 370 aaKnown RBP11.31□□□□□ -0.6
CIITA-203ENST00000537380 A0A0D9SFI3 127 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 UFL1O94874 794 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 HSPA4P34932 840 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 KIAA2012Q0VF49 1180 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 WASHC4Q2M389 1173 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 TSGA10IPQ3SY00 556 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 FAM227BQ96M60 508 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 DSCC1Q9BVC3 393 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 COA1Q9GZY4 146 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 ANTXR1Q9H6X2 564 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 ANO2Q9NQ90 1003 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 POLLQ9UGP5 575 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 SUGT1Q9Y2Z0 365 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 CCDC171Q6TFL3 1326 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 FAM205AQ6ZU69 1335 aa11.3□□□□□ -0.6
CIITA-203ENST00000537380 PSME4Q14997 1843 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms