RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RPS12P25398 132 aaKnown RBP14.61□□□□□ -0.07
CLIP1-208ENST00000537004 RFX5P48382 616 aaPredicted RBP14.61□□□□□ -0.07
CLIP1-208ENST00000537004 DACT2Q5SW24 774 aa14.61□□□□□ -0.07
CLIP1-208ENST00000537004 GMLQ99445 158 aa14.61□□□□□ -0.07
CLIP1-208ENST00000537004 GLIS2Q9BZE0 524 aaPredicted RBP14.61□□□□□ -0.07
CLIP1-208ENST00000537004 CD209Q9NNX6 404 aa14.61□□□□□ -0.07
CLIP1-208ENST00000537004 ASTN2O75129 1339 aaPredicted RBP14.6□□□□□ -0.07
CLIP1-208ENST00000537004 MFAP1P55081 439 aaKnown RBP14.6□□□□□ -0.07
CLIP1-208ENST00000537004 GTF2IP78347 998 aa14.6□□□□□ -0.07
CLIP1-208ENST00000537004 DAXXQ9UER7 740 aaPredicted RBP14.6□□□□□ -0.07
CLIP1-208ENST00000537004 PTPN12Q05209 780 aaKnown RBP14.59□□□□□ -0.07
CLIP1-208ENST00000537004 TTLL5Q6EMB2 1281 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 SIL1Q9H173 461 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 EXOC6BQ9Y2D4 811 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 GYG1P46976 350 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 METTL24Q5JXM2 366 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 TTC22Q5TAA0 569 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 AGBL3Q8NEM8 1001 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 OTUD7AQ8TE49 926 aaPredicted RBP14.59□□□□□ -0.07
CLIP1-208ENST00000537004 KLRG1Q96E93 195 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 CREBZFQ9NS37 354 aa14.59□□□□□ -0.07
CLIP1-208ENST00000537004 MKRN1Q9UHC7 482 aaKnown RBP14.59□□□□□ -0.07
CLIP1-208ENST00000537004 PA2G4Q9UQ80 394 aaKnown RBP14.59□□□□□ -0.07
CLIP1-208ENST00000537004 GSPT1P15170 499 aaKnown RBP14.58□□□□□ -0.08
CLIP1-208ENST00000537004 SLC4A3P48751 1232 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 KIF4BQ2VIQ3 1234 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 STRIP1Q5VSL9 837 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 SCAF8Q9UPN6 1271 aaKnown RBP14.58□□□□□ -0.08
CLIP1-208ENST00000537004 MROH5Q6ZUA9 1318 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 USP17L8P0C7I0 530 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 C15orf52Q6ZUT6 534 aaKnown RBP14.58□□□□□ -0.08
CLIP1-208ENST00000537004 VGLL2Q8N8G2 317 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 SSH3Q8TE77 659 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 C22orf23Q9BZE7 217 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 PGAP2Q9UHJ9 254 aa14.58□□□□□ -0.08
CLIP1-208ENST00000537004 TMEM88BA6NKF7 163 aa14.57□□□□□ -0.08
CLIP1-208ENST00000537004 PDE8BO95263 885 aa14.57□□□□□ -0.08
CLIP1-208ENST00000537004 UBE4AQ14139 1066 aa14.57□□□□□ -0.08
CLIP1-208ENST00000537004 CST9Q5W186 159 aa14.57□□□□□ -0.08
CLIP1-208ENST00000537004 KIAA0825Q8IV33 1275 aa14.57□□□□□ -0.08
CLIP1-208ENST00000537004 FAM84BQ96KN1 310 aaPredicted RBP14.57□□□□□ -0.08
CLIP1-208ENST00000537004 IQSEC3Q9UPP2 1182 aaPredicted RBP14.57□□□□□ -0.08
CLIP1-208ENST00000537004 ZNF280AP59817 542 aaPredicted RBP14.56□□□□□ -0.08
CLIP1-208ENST00000537004 TBC1D9Q6ZT07 1266 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 ATG9AQ7Z3C6 839 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 ZNF804AQ7Z570 1209 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 USP48Q86UV5 1035 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 CERS5Q8N5B7 392 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 ZC3H15Q8WU90 426 aaKnown RBP14.56□□□□□ -0.08
CLIP1-208ENST00000537004 LRRCC1Q9C099 1032 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 MYOZ2Q9NPC6 264 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 EYA2O00167 538 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 IL1R1P14778 569 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 ZNF408Q9H9D4 720 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 GGA3Q9NZ52 723 aa14.56□□□□□ -0.08
CLIP1-208ENST00000537004 ADM5C9JUS6 153 aa14.55□□□□□ -0.08
CLIP1-208ENST00000537004 CDC45O75419 566 aa14.55□□□□□ -0.08
CLIP1-208ENST00000537004 SCARF1Q14162 830 aa14.55□□□□□ -0.08
CLIP1-208ENST00000537004 POLA2Q14181 598 aa14.55□□□□□ -0.08
CLIP1-208ENST00000537004 NBPF9Q3BBW0 867 aa14.55□□□□□ -0.08
CLIP1-208ENST00000537004 F8W031 263 aaPredicted RBP14.54□□□□□ -0.08
CLIP1-208ENST00000537004 SRGAP3O43295 1099 aa14.54□□□□□ -0.08
CLIP1-208ENST00000537004 HIBADHP31937 336 aaKnown RBP14.54□□□□□ -0.08
CLIP1-208ENST00000537004 CDC37L1Q7L3B6 337 aa14.54□□□□□ -0.08
CLIP1-208ENST00000537004 KRT26Q7Z3Y9 468 aa14.54□□□□□ -0.08
CLIP1-208ENST00000537004 ABT1Q9ULW3 272 aaKnown RBP14.54□□□□□ -0.08
CLIP1-208ENST00000537004 CELF2O95319 508 aaKnown RBP14.54□□□□□ -0.08
CLIP1-208ENST00000537004 BCAMP50895 628 aa14.54□□□□□ -0.08
CLIP1-208ENST00000537004 ANGEL2Q5VTE6 544 aaKnown RBP14.54□□□□□ -0.08
CLIP1-208ENST00000537004 OGFOD1Q8N543 542 aa14.54□□□□□ -0.08
CLIP1-208ENST00000537004 PCDHAC2Q9Y5I4 1007 aa14.54□□□□□ -0.08
CLIP1-208ENST00000537004 A0A1B0GUL6 1792 aa14.54□□□□□ -0.08
CLIP1-208ENST00000537004 ZNF609O15014 1411 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 SASH1O94885 1247 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 BECN1Q14457 450 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 TDRD7Q8NHU6 1098 aaKnown RBP14.53□□□□□ -0.08
CLIP1-208ENST00000537004 OSBPL3Q9H4L5 887 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 FGFR2P21802 821 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 PDE1AP54750 535 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 FBXO33Q7Z6M2 555 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 VPS37DQ86XT2 251 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 DCPSQ96C86 337 aaKnown RBP14.53□□□□□ -0.08
CLIP1-208ENST00000537004 HDAC5Q9UQL6 1122 aa14.53□□□□□ -0.08
CLIP1-208ENST00000537004 SALL3Q9BXA9 1300 aa14.52□□□□□ -0.08
CLIP1-208ENST00000537004 WNT10BO00744 389 aa14.52□□□□□ -0.09
CLIP1-208ENST00000537004 SURF6O75683 361 aaKnown RBP14.52□□□□□ -0.09
CLIP1-208ENST00000537004 MTX1Q13505 466 aa14.52□□□□□ -0.09
CLIP1-208ENST00000537004 PUM3Q15397 648 aaKnown RBP14.52□□□□□ -0.09
CLIP1-208ENST00000537004 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.52□□□□□ -0.09
CLIP1-208ENST00000537004 MYO3BQ8WXR4 1341 aa14.52□□□□□ -0.09
CLIP1-208ENST00000537004 CNTNAP1P78357 1384 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 RAB11FIP3O75154 756 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 SDSP20132 328 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 RBM25P49756 843 aaKnown RBP14.51□□□□□ -0.09
CLIP1-208ENST00000537004 VEGFBP49765 207 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 PRAMEF18Q5VWM3 479 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 JMYQ8N9B5 988 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 COPRSQ9NQ92 184 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 CIAO1O76071 339 aa14.51□□□□□ -0.09
CLIP1-208ENST00000537004 MX1P20591 662 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms