RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 TTF1Q15361 905 aaPredicted RBP15.78■□□□□ 0.12
VPS33B-202ENST00000535906 NSUN7Q8NE18 718 aaKnown RBP15.78■□□□□ 0.12
VPS33B-202ENST00000535906 MPHOSPH8Q99549 860 aa15.78■□□□□ 0.12
VPS33B-202ENST00000535906 CICQ96RK0 1608 aaPredicted RBP15.78■□□□□ 0.12
VPS33B-202ENST00000535906 LETM1O95202 739 aaPredicted RBP15.78■□□□□ 0.12
VPS33B-202ENST00000535906 SMARCC1Q92922 1105 aaPredicted RBP15.78■□□□□ 0.12
VPS33B-202ENST00000535906 LLPHQ9BRT6 129 aaKnown RBP15.78■□□□□ 0.12
VPS33B-202ENST00000535906 PDIA3P30101 505 aaKnown RBP15.77■□□□□ 0.12
VPS33B-202ENST00000535906 ZSCAN25Q6NSZ9 544 aa15.77■□□□□ 0.12
VPS33B-202ENST00000535906 FAM184AQ8NB25 1140 aa15.77■□□□□ 0.12
VPS33B-202ENST00000535906 NCOA5Q9HCD5 579 aaKnown RBP15.77■□□□□ 0.12
VPS33B-202ENST00000535906 GPHNQ9NQX3 736 aaPredicted RBP15.77■□□□□ 0.12
VPS33B-202ENST00000535906 UQCRFS1P1P0C7P4 283 aa15.77■□□□□ 0.11
VPS33B-202ENST00000535906 KCNQ4P56696 695 aa15.77■□□□□ 0.11
VPS33B-202ENST00000535906 TFIP11Q9UBB9 837 aaKnown RBP15.77■□□□□ 0.11
VPS33B-202ENST00000535906 CCDC152Q4G0S7 254 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 KLHL34Q8N239 644 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 FBXL16Q8N461 479 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 ZNF274Q96GC6 653 aaPredicted RBP15.76■□□□□ 0.11
VPS33B-202ENST00000535906 WWC3Q9ULE0 1092 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 NAP1L2Q9ULW6 460 aaPredicted RBP15.76■□□□□ 0.11
VPS33B-202ENST00000535906 ZNF532Q9HCE3 1301 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 COL5A3P25940 1745 aaPredicted RBP15.76■□□□□ 0.11
VPS33B-202ENST00000535906 ARAP2Q8WZ64 1704 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 SLC5A1P13866 664 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 UBE3CQ15386 1083 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 LINC00116Q8NCU8 138 aa15.76■□□□□ 0.11
VPS33B-202ENST00000535906 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.76■□□□□ 0.11
VPS33B-202ENST00000535906 ATRNO75882 1429 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 PTPDC1A2A3K4 754 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 ZNF213O14771 459 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 PPFIA3O75145 1194 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 PDE6AP16499 860 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 RESTQ13127 1097 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 MB21D2Q8IYB1 491 aaPredicted RBP15.75■□□□□ 0.11
VPS33B-202ENST00000535906 SPATA5Q8NB90 893 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 C8orf37Q96NL8 207 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 CCDC39Q9UFE4 941 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 ELP1O95163 1332 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 TCRBV5S4A2TA0A5A2 114 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 H3BQV1 296 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 ZNF500O60304 480 aaPredicted RBP15.75■□□□□ 0.11
VPS33B-202ENST00000535906 EVCP57679 992 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 RASGRF1Q13972 1273 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 UVSSAQ2YD98 709 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 IFFO2Q5TF58 517 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 PTF1AQ7RTS3 328 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 NBPF3Q9H094 633 aa15.75■□□□□ 0.11
VPS33B-202ENST00000535906 SALL1Q9NSC2 1324 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 BCL9LQ86UU0 1499 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 MCM5P33992 734 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 NGLY1Q96IV0 654 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 SCAND2PQ9GZW5 306 aaPredicted RBP15.74■□□□□ 0.11
VPS33B-202ENST00000535906 ZKSCAN5Q9Y2L8 839 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 COL4A1P02462 1669 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 PRC1O43663 620 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 OFD1O75665 1012 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 IGHMBP2P38935 993 aaKnown RBP15.74■□□□□ 0.11
VPS33B-202ENST00000535906 ANTXR2P58335 489 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 NCOA7Q8NI08 942 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 ZNF652Q9Y2D9 606 aa15.74■□□□□ 0.11
VPS33B-202ENST00000535906 RTL9Q8NET4 1388 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 HMGN5P82970 282 aaKnown RBP15.73■□□□□ 0.11
VPS33B-202ENST00000535906 SMIM5Q71RC9 77 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 LEO1Q8WVC0 666 aaPredicted RBP15.73■□□□□ 0.11
VPS33B-202ENST00000535906 SPATA32Q96LK8 384 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 DENND2AQ9ULE3 1009 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 LAMB2P55268 1798 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 BCAMP50895 628 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 FOSBP53539 338 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 VPS72Q15906 364 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 GIMAP6Q6P9H5 292 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 CLEC4GQ6UXB4 293 aa15.73■□□□□ 0.11
VPS33B-202ENST00000535906 BCORQ6W2J9 1755 aa15.72■□□□□ 0.11
VPS33B-202ENST00000535906 APPP05067 770 aa15.72■□□□□ 0.11
VPS33B-202ENST00000535906 CHRNDQ07001 517 aa15.72■□□□□ 0.11
VPS33B-202ENST00000535906 NKX2-3Q8TAU0 364 aa15.72■□□□□ 0.11
VPS33B-202ENST00000535906 ZSCAN16Q9H4T2 348 aaPredicted RBP15.72■□□□□ 0.11
VPS33B-202ENST00000535906 LIG1P18858 919 aa15.72■□□□□ 0.11
VPS33B-202ENST00000535906 ERFEQ4G0M1 354 aa15.72■□□□□ 0.11
VPS33B-202ENST00000535906 C3orf67Q6ZVT6 689 aa15.72■□□□□ 0.11
VPS33B-202ENST00000535906 RALYLQ86SE5 291 aaKnown RBP15.72■□□□□ 0.11
VPS33B-202ENST00000535906 STRBPQ96SI9 672 aaKnown RBP15.72■□□□□ 0.11
VPS33B-202ENST00000535906 FDPSP14324 419 aaKnown RBP15.71■□□□□ 0.11
VPS33B-202ENST00000535906 NAA16Q6N069 864 aaPredicted RBP15.71■□□□□ 0.11
VPS33B-202ENST00000535906 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.71■□□□□ 0.11
VPS33B-202ENST00000535906 TBC1D10CQ8IV04 446 aa15.71■□□□□ 0.11
VPS33B-202ENST00000535906 MAGEB6Q8N7X4 407 aa15.71■□□□□ 0.11
VPS33B-202ENST00000535906 AIDAQ96BJ3 306 aa15.71■□□□□ 0.11
VPS33B-202ENST00000535906 FUCA2Q9BTY2 467 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 HPS5Q9UPZ3 1129 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 ZNF831Q5JPB2 1677 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 DOCK2Q92608 1830 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 KLF18A0A0U1RQI7 1052 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 UBAP1LF5GYI3 381 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 MAP3K12Q12852 859 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 TAF1P21675 1872 aa15.7■□□□□ 0.1
VPS33B-202ENST00000535906 ADD1P35611 737 aaKnown RBP15.69■□□□□ 0.1
VPS33B-202ENST00000535906 BICDL1Q6ZP65 573 aa15.69■□□□□ 0.1
VPS33B-202ENST00000535906 RAB11FIP4Q86YS3 637 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms