RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 GRM8O00222 908 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 CTAGE5O15320 804 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 CYP27B1O15528 508 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 FIBPO43427 364 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 NEMFO60524 1076 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 HMGB1P09429 215 aaKnown RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 PHKG2P15735 406 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 RPS6KB1P23443 525 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 DNTTIP2Q5QJE6 756 aaKnown RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 FOXD4L5Q5VV16 416 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 CREB3L3Q68CJ9 461 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 BLOC1S2Q6QNY1 142 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 ILDR2Q71H61 639 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 NOL8Q76FK4 1167 aaKnown RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 CCDC125Q86Z20 511 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 DDX54Q8TDD1 881 aaKnown RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 FOXD4L4Q8WXT5 416 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 DDX27Q96GQ7 796 aaKnown RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 PKNOX2Q96KN3 472 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 LLPHQ9BRT6 129 aaKnown RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 GDPD2Q9HCC8 539 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 DDX21Q9NR30 783 aaKnown RBP eCLIP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 FAM13BQ9NYF5 915 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 C9orf78Q9NZ63 289 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 RBM8AQ9Y5S9 174 aaKnown RBP7.47□□□□□ -1.21
SYNE1-233ENST00000535896 UBR2Q8IWV8 1755 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 NHSQ6T4R5 1651 aa7.47□□□□□ -1.21
SYNE1-233ENST00000535896 SLC27A2O14975 620 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 RNMTO43148 476 aaKnown RBP7.46□□□□□ -1.21
SYNE1-233ENST00000535896 KCNC4Q03721 635 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 DNM1Q05193 864 aaKnown RBP7.46□□□□□ -1.21
SYNE1-233ENST00000535896 G3BP1Q13283 466 aaKnown RBP eCLIP7.46□□□□□ -1.21
SYNE1-233ENST00000535896 ME3Q16798 604 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 UTP14CQ5TAP6 766 aaKnown RBP7.46□□□□□ -1.21
SYNE1-233ENST00000535896 LARP1BQ659C4 914 aaKnown RBP7.46□□□□□ -1.21
SYNE1-233ENST00000535896 PRPF40BQ6NWY9 871 aaKnown RBP7.46□□□□□ -1.21
SYNE1-233ENST00000535896 SARM1Q6SZW1 724 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 CCDC83Q8IWF9 413 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 TDRD7Q8NHU6 1098 aaKnown RBP7.46□□□□□ -1.21
SYNE1-233ENST00000535896 DCAF5Q96JK2 942 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 ZMYND15Q9H091 742 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 CLSTN2Q9H4D0 955 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 WDR70Q9NW82 654 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 CFAP45Q9UL16 551 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 PALLDQ8WX93 1383 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 SBF2Q86WG5 1849 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 MYH7P12883 1935 aa7.46□□□□□ -1.21
SYNE1-233ENST00000535896 KAT6BQ8WYB5 2073 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 PAPPAQ13219 1627 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 TJP1Q07157 1748 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 DOT1LQ8TEK3 1739 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 CTIFO43310 598 aaKnown RBP7.46□□□□□ -1.22
SYNE1-233ENST00000535896 LARGE1O95461 756 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 KCNJ4P48050 445 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 PTH1RQ03431 593 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 TYRO3Q06418 890 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 NEXNQ0ZGT2 675 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 ST3GAL1Q11201 340 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 TYW1BQ6NUM6 668 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 AACSQ86V21 672 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 FBXW7Q969H0 707 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 CHAMP1Q96JM3 812 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 ZFRQ96KR1 1074 aaKnown RBP7.46□□□□□ -1.22
SYNE1-233ENST00000535896 COPRSQ9NQ92 184 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 WBP1LQ9NX94 342 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 MAP3K2Q9Y2U5 619 aa7.46□□□□□ -1.22
SYNE1-233ENST00000535896 SH3TC1Q8TE82 1336 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 VPS37CA5D8V6 355 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-233ENST00000535896 GOLGA6L4A6NEF3 574 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 ERVV-2B6SEH9 535 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 ATP5JP18859 108 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 EIF2S2P20042 333 aaKnown RBP7.45□□□□□ -1.22
SYNE1-233ENST00000535896 NMIQ13287 307 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-233ENST00000535896 ADCK5Q3MIX3 580 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 NAA16Q6N069 864 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-233ENST00000535896 TTC6Q86TZ1 520 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 PLA2G4DQ86XP0 818 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 FBXL16Q8N461 479 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 PDCL2Q8N4E4 241 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 NECTIN2Q92692 538 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 GTF3C6Q969F1 213 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 SPATA32Q96LK8 384 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 FEZ1Q99689 392 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 FSD1Q9BTV5 496 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 TNMDQ9H2S6 317 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 KCND1Q9NSA2 647 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 KIAA1468Q9P260 1216 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 TPCN1Q9ULQ1 816 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 PAXBP1Q9Y5B6 917 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 MRVI1Q9Y6F6 885 aa7.45□□□□□ -1.22
SYNE1-233ENST00000535896 TNS1Q9HBL0 1735 aaKnown RBP7.44□□□□□ -1.22
SYNE1-233ENST00000535896 TOGARAM1Q9Y4F4 1720 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 KDM6AO15550 1401 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-233ENST00000535896 RGPD3A6NKT7 1758 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-233ENST00000535896 RGPD4Q7Z3J3 1758 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 ABCC12Q96J65 1359 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 SMTNL1A8MU46 457 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 KIF2AO00139 706 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-233ENST00000535896 TUBB4AP04350 444 aa7.44□□□□□ -1.22
SYNE1-233ENST00000535896 SF3B2Q13435 895 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms