RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 GJD3Q8N144 294 aa8.45□□□□□ -1.06
USP28-202ENST00000535607 VWA5B2Q8N398 1253 aa8.45□□□□□ -1.06
USP28-202ENST00000535607 NSFL1CQ9UNZ2 370 aaKnown RBP8.45□□□□□ -1.06
USP28-202ENST00000535607 USP20Q9Y2K6 914 aa8.45□□□□□ -1.06
USP28-202ENST00000535607 KDM5AP29375 1690 aaKnown RBP8.45□□□□□ -1.06
USP28-202ENST00000535607 KIF7Q2M1P5 1343 aa8.45□□□□□ -1.06
USP28-202ENST00000535607 INSRP06213 1382 aa8.45□□□□□ -1.06
USP28-202ENST00000535607 ERVK-7P63135 1459 aa8.45□□□□□ -1.06
USP28-202ENST00000535607 MADDQ8WXG6 1647 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 CCINQ13939 588 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 COL19A1Q14993 1142 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 GGT6Q6P531 493 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 SLC16A10Q8TF71 515 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 KLRG1Q96E93 195 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 ABHD17AQ96GS6 310 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 FAM129BQ96TA1 746 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 NIF3L1Q9GZT8 377 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 NXF1Q9UBU9 619 aaKnown RBP8.44□□□□□ -1.06
USP28-202ENST00000535607 RCAN3Q9UKA8 241 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 PRR12Q9ULL5 1215 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 LAS1LQ9Y4W2 734 aaKnown RBP8.44□□□□□ -1.06
USP28-202ENST00000535607 SYNMO15061 1565 aa8.44□□□□□ -1.06
USP28-202ENST00000535607 CLTCL1P53675 1640 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 FGFR3P22607 806 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 TNP2Q05952 138 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 ZNF787Q6DD87 383 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 SNX29Q8TEQ0 813 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 CFHR5Q9BXR6 569 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 EFCC1Q9HA90 598 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 SPATA31E1Q6ZUB1 1445 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 PLA2R1Q13018 1463 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 ADGRB3O60242 1522 aa8.43□□□□□ -1.06
USP28-202ENST00000535607 TREHO43280 583 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 BNIP3LO60238 219 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 PHACTR2O75167 634 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 KCNQ4P56696 695 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 SFSWAPQ12872 951 aaKnown RBP8.42□□□□□ -1.06
USP28-202ENST00000535607 CCDC184Q52MB2 194 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 KRT25Q7Z3Z0 450 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 NLRP13Q86W25 1043 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 GIPC2Q8TF65 315 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 ALKBH8Q96BT7 664 aaKnown RBP8.42□□□□□ -1.06
USP28-202ENST00000535607 CUEDC1Q9NWM3 386 aaPredicted RBP8.42□□□□□ -1.06
USP28-202ENST00000535607 C3P01024 1663 aa8.42□□□□□ -1.06
USP28-202ENST00000535607 KIF1BO60333 1816 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 RIMS1Q86UR5 1692 aaKnown RBP8.41□□□□□ -1.06
USP28-202ENST00000535607 NLRP1Q9C000 1473 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 MYBBP1AQ9BQG0 1328 aaKnown RBP8.41□□□□□ -1.06
USP28-202ENST00000535607 PHF20L1A8MW92 1017 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 RARAP10276 462 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 CD33P20138 364 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 RBM25P49756 843 aaKnown RBP8.41□□□□□ -1.06
USP28-202ENST00000535607 SPEM2Q0P670 501 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 NPAS4Q8IUM7 802 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 NPAS3Q8IXF0 933 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.41□□□□□ -1.06
USP28-202ENST00000535607 PNISRQ8TF01 805 aaKnown RBP8.41□□□□□ -1.06
USP28-202ENST00000535607 PMEPA1Q969W9 287 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 ELP3Q9H9T3 547 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 ABI2Q9NYB9 513 aaPredicted RBP8.41□□□□□ -1.06
USP28-202ENST00000535607 KCNMB2Q9Y691 235 aa8.41□□□□□ -1.06
USP28-202ENST00000535607 LRPPRCP42704 1394 aaKnown RBP8.4□□□□□ -1.06
USP28-202ENST00000535607 A6NHS1 94 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 GPR25O00155 361 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 EFSO43281 561 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 PSAPP07602 524 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 BMP4P12644 408 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 XPCQ01831 940 aaPredicted RBP8.4□□□□□ -1.06
USP28-202ENST00000535607 NFKBIBQ15653 356 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 BHMTQ93088 406 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 GGNBP2Q9H3C7 697 aa8.4□□□□□ -1.06
USP28-202ENST00000535607 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.4□□□□□ -1.06
USP28-202ENST00000535607 ZNF142P52746 1687 aaPredicted RBP8.4□□□□□ -1.07
USP28-202ENST00000535607 ZMYM3Q14202 1370 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 PNMA6FA0A0J9YX94 578 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 GPR182O15218 404 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 CPNE3O75131 537 aaKnown RBP8.39□□□□□ -1.07
USP28-202ENST00000535607 SASH3O75995 380 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 EGFRP00533 1210 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 MX2P20592 715 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 BECN1Q14457 450 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 CENPQQ7L2Z9 268 aaPredicted RBP8.39□□□□□ -1.07
USP28-202ENST00000535607 DNAJC25Q9H1X3 360 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 SLC52A1Q9NWF4 448 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 MYO3AQ8NEV4 1616 aa8.39□□□□□ -1.07
USP28-202ENST00000535607 MYOM2P54296 1465 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 IFT172Q9UG01 1749 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 POTECB2RU33 542 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 TNFRSF21O75509 655 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 LDHBP07195 334 aaKnown RBP8.38□□□□□ -1.07
USP28-202ENST00000535607 P4HBP07237 508 aaKnown RBP8.38□□□□□ -1.07
USP28-202ENST00000535607 NFKB1P19838 968 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 VEGFBP49765 207 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 FMR1Q06787 632 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP28-202ENST00000535607 TRIP4Q15650 581 aaPredicted RBP8.38□□□□□ -1.07
USP28-202ENST00000535607 ALG1LQ6GMV1 187 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 XKR5Q6UX68 686 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 NANOS1Q8WY41 292 aaKnown RBP8.38□□□□□ -1.07
USP28-202ENST00000535607 CSRNP1Q96S65 589 aa8.38□□□□□ -1.07
USP28-202ENST00000535607 USP47Q96K76 1375 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms