RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 CUL9Q8IWT3 2517 aa11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 IGF2BP3O00425 579 aaKnown RBP eCLIP11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 EN2P19622 333 aaPredicted RBP11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 CHRNDQ07001 517 aa11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 TWISTNBQ3B726 338 aaPredicted RBP11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 APOBEC3FQ8IUX4 373 aaKnown RBP11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 CD209Q9NNX6 404 aa11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 ANGEL1Q9UNK9 670 aaKnown RBP11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 MYH13Q9UKX3 1938 aa11.8□□□□□ -0.52
CHMP4A-205ENST00000531158 H0YGN5 161 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 TAF5LO75529 589 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 SLC4A2P04920 1241 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 IGHMBP2P38935 993 aaKnown RBP11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 NEXNQ0ZGT2 675 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 SREBF2Q12772 1141 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 MAP3K11Q16584 847 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 CHRDL2Q6WN34 429 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 HELBQ8NG08 1087 aaPredicted RBP11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 OTUD5Q96G74 571 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 DEFB129Q9H1M3 183 aa11.79□□□□□ -0.52
CHMP4A-205ENST00000531158 FKTNO75072 461 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 NF2P35240 595 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 GJA5P36382 358 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 FOXO4P98177 505 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 FLIIQ13045 1269 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 ARMC9Q7Z3E5 817 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 IFNL1Q8IU54 200 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 WWC1Q8IX03 1113 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 MTMR14Q8NCE2 650 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 PRMT6Q96LA8 375 aaPredicted RBP11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 ANKRD2Q9GZV1 360 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 JAG2Q9Y219 1238 aa11.78□□□□□ -0.52
CHMP4A-205ENST00000531158 CLRN2A0PK11 232 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 MMP14P50281 582 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 CCDC27Q2M243 656 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 EPHA10Q5JZY3 1008 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 C15orf52Q6ZUT6 534 aaKnown RBP11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 CDAN1Q8IWY9 1227 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 WNK4Q96J92 1243 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 STK31Q9BXU1 1019 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 FANCIQ9NVI1 1328 aa11.77□□□□□ -0.53
CHMP4A-205ENST00000531158 TRIOBPQ9H2D6 2365 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 SPDYE2BA6NHP3 402 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 F8W031 263 aaPredicted RBP11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 SPDYE6P0CI01 402 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 ZBTB48P10074 688 aaPredicted RBP11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 IL1R1P14778 569 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 DLGAP5Q15398 846 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 CFAP100Q494V2 611 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 NBPF12Q5TAG4 269 aaPredicted RBP11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 OTOP1Q7RTM1 612 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 LINS1Q8NG48 757 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 DNAAF4Q8WXU2 420 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 MPHOSPH8Q99549 860 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 PTPN18Q99952 460 aa11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 RBM27Q9P2N5 1060 aaKnown RBP11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 RANBP2P49792 3224 aaKnown RBP11.76□□□□□ -0.53
CHMP4A-205ENST00000531158 COL6A3P12111 3177 aa11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 F6X3S4 739 aa11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 USP2O75604 605 aaPredicted RBP11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 CRHR2Q13324 411 aa11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 FKBP5Q13451 457 aaPredicted RBP11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 ZNF594Q96JF6 807 aaPredicted RBP11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 TRIM17Q9Y577 477 aa11.75□□□□□ -0.53
CHMP4A-205ENST00000531158 ANKRD18BA2A2Z9 1011 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 MANSC4A6NHS7 340 aaPredicted RBP11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 VAMP4O75379 141 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 ALDH1A1P00352 501 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 KCNJ4P48050 445 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 BEND3Q5T5X7 828 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 SLC10A4Q96EP9 437 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 CHMP4AQ9BY43 222 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 PPP2R3BQ9Y5P8 575 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 IL16Q14005 1332 aa11.74□□□□□ -0.53
CHMP4A-205ENST00000531158 TESPA1A2RU30 521 aaPredicted RBP11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 CD99L2Q8TCZ2 262 aa11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 CNKSR2Q8WXI2 1034 aa11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 TEPSINQ96N21 525 aa11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 TMEM106CQ9BVX2 250 aa11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 MYH16Q9H6N6 1097 aa11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 VEZTQ9HBM0 779 aa11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 SPINK5Q9NQ38 1064 aaPredicted RBP11.73□□□□□ -0.53
CHMP4A-205ENST00000531158 MGAMO43451 1857 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 FAM205AQ6ZU69 1335 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 PPP1R12BO60237 982 aaPredicted RBP11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 INHBEP58166 350 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 FKBP1AP62942 108 aaKnown RBP11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 IFIT5Q13325 482 aaKnown RBP11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 RASA3Q14644 834 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 GRIK5Q16478 980 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 LMBR1LQ6UX01 489 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 ZNF804AQ7Z570 1209 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 KAZALD1Q96I82 304 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 MS4A4AQ96JQ5 239 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 PTPN22Q9Y2R2 807 aa11.72□□□□□ -0.53
CHMP4A-205ENST00000531158 GYG1P46976 350 aa11.71□□□□□ -0.53
CHMP4A-205ENST00000531158 EXOSC9Q06265 439 aaKnown RBP11.71□□□□□ -0.53
CHMP4A-205ENST00000531158 SPDYE2Q495Y8 402 aa11.71□□□□□ -0.53
CHMP4A-205ENST00000531158 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms