RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 MAMSTRQ6ZN01 415 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 XAGE3Q8WTP9 111 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 WNK4Q96J92 1243 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 GGA1Q9UJY5 639 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 ANGEL1Q9UNK9 670 aaKnown RBP10.84□□□□□ -0.67
CD44-232ENST00000531118 PTCH2Q9Y6C5 1203 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 MYH3P11055 1940 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 A0A0C4DFX4 3053 aa10.83□□□□□ -0.68
CD44-232ENST00000531118 ZBTB48P10074 688 aaPredicted RBP10.83□□□□□ -0.68
CD44-232ENST00000531118 SLC9C1Q4G0N8 1177 aa10.83□□□□□ -0.68
CD44-232ENST00000531118 TSHZ2Q9NRE2 1034 aa10.83□□□□□ -0.68
CD44-232ENST00000531118 FZD1Q9UP38 647 aa10.83□□□□□ -0.68
CD44-232ENST00000531118 USP17L3A6NCW0 530 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 USP17L4A6NCW7 530 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 WNT10BO00744 389 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 EIF2S2P20042 333 aaKnown RBP10.82□□□□□ -0.68
CD44-232ENST00000531118 INHBEP58166 350 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 AIMP1Q12904 312 aaKnown RBP10.82□□□□□ -0.68
CD44-232ENST00000531118 SLC4A8Q2Y0W8 1093 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 COPS6Q7L5N1 327 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 USP17L1Q7RTZ2 530 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 APOBEC3FQ8IUX4 373 aaKnown RBP10.82□□□□□ -0.68
CD44-232ENST00000531118 PRO3102Q9H379 93 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 ANKIB1Q9P2G1 1089 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 ALPK3Q96L96 1907 aa10.82□□□□□ -0.68
CD44-232ENST00000531118 MED23Q9ULK4 1368 aa10.81□□□□□ -0.68
CD44-232ENST00000531118 POTEB2H3BUK9 544 aa10.81□□□□□ -0.68
CD44-232ENST00000531118 SP3Q02447 781 aa10.81□□□□□ -0.68
CD44-232ENST00000531118 SHISA4Q96DD7 197 aa10.81□□□□□ -0.68
CD44-232ENST00000531118 FAM89AQ96GI7 184 aa10.81□□□□□ -0.68
CD44-232ENST00000531118 CLMNQ96JQ2 1002 aa10.81□□□□□ -0.68
CD44-232ENST00000531118 RPS8P62241 208 aaKnown RBP10.8□□□□□ -0.68
CD44-232ENST00000531118 MAP3K11Q16584 847 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 DACT2Q5SW24 774 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 ISCA1Q9BUE6 129 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 MXD3Q9BW11 206 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 SCUBE2Q9NQ36 999 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.8□□□□□ -0.68
CD44-232ENST00000531118 TSPYL4Q9UJ04 414 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 XDHP47989 1333 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 MYO3BQ8WXR4 1341 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 CLSPNQ9HAW4 1339 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 A0A1B0GUL6 1792 aa10.8□□□□□ -0.68
CD44-232ENST00000531118 ARAP2Q8WZ64 1704 aa10.79□□□□□ -0.68
CD44-232ENST00000531118 SOX1O00570 391 aaPredicted RBP10.79□□□□□ -0.68
CD44-232ENST00000531118 MYCP01106 439 aaPredicted RBP10.79□□□□□ -0.68
CD44-232ENST00000531118 GJA5P36382 358 aa10.79□□□□□ -0.68
CD44-232ENST00000531118 PODNQ7Z5L7 613 aa10.79□□□□□ -0.68
CD44-232ENST00000531118 NBPF11Q86T75 865 aa10.79□□□□□ -0.68
CD44-232ENST00000531118 SEC31BQ9NQW1 1179 aa10.79□□□□□ -0.68
CD44-232ENST00000531118 IRS4O14654 1257 aaPredicted RBP10.78□□□□□ -0.68
CD44-232ENST00000531118 NFE2L2Q16236 605 aa10.78□□□□□ -0.68
CD44-232ENST00000531118 RTL5Q5HYW3 569 aaPredicted RBP10.78□□□□□ -0.68
CD44-232ENST00000531118 OTUD7BQ6GQQ9 843 aa10.78□□□□□ -0.68
CD44-232ENST00000531118 OGFOD1Q8N543 542 aa10.78□□□□□ -0.68
CD44-232ENST00000531118 SH3TC2Q8TF17 1288 aa10.78□□□□□ -0.68
CD44-232ENST00000531118 FBXW7Q969H0 707 aa10.78□□□□□ -0.68
CD44-232ENST00000531118 SLC10A4Q96EP9 437 aa10.78□□□□□ -0.68
CD44-232ENST00000531118 A0A1W2PPC1 479 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 ATP5J2-PTCD1G3V325 749 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 NEFMP07197 916 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 ATP2B4P23634 1241 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 PPP2R1AP30153 589 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 LHX8Q68G74 356 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 DPF3Q92784 378 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 LRCH3Q96II8 777 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 ZBED3Q96IU2 234 aaPredicted RBP10.77□□□□□ -0.69
CD44-232ENST00000531118 PTPN18Q99952 460 aa10.77□□□□□ -0.69
CD44-232ENST00000531118 TESPA1A2RU30 521 aaPredicted RBP10.76□□□□□ -0.69
CD44-232ENST00000531118 PDE4AP27815 886 aa10.76□□□□□ -0.69
CD44-232ENST00000531118 PLBD2Q8NHP8 589 aa10.76□□□□□ -0.69
CD44-232ENST00000531118 CRISPLD2Q9H0B8 497 aa10.76□□□□□ -0.69
CD44-232ENST00000531118 CHPF2Q9P2E5 772 aa10.76□□□□□ -0.69
CD44-232ENST00000531118 PPP2R3BQ9Y5P8 575 aa10.76□□□□□ -0.69
CD44-232ENST00000531118 UNC80Q8N2C7 3258 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 WTIPA6NIX2 430 aaPredicted RBP10.75□□□□□ -0.69
CD44-232ENST00000531118 UNCXA6NJT0 531 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 PPP1R12BO60237 982 aaPredicted RBP10.75□□□□□ -0.69
CD44-232ENST00000531118 ARHGEF6Q15052 776 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 TAF1CQ15572 869 aaPredicted RBP10.75□□□□□ -0.69
CD44-232ENST00000531118 STRIP1Q5VSL9 837 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 TMC2Q8TDI7 906 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 PLEKHF1Q96S99 279 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 HTATIP2Q9BUP3 242 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 DEFB129Q9H1M3 183 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 ZNF804BA4D1E1 1349 aa10.75□□□□□ -0.69
CD44-232ENST00000531118 ZBTB7BO15156 539 aaPredicted RBP10.74□□□□□ -0.69
CD44-232ENST00000531118 IREB2P48200 963 aaKnown RBP10.74□□□□□ -0.69
CD44-232ENST00000531118 MMP14P50281 582 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 CCDC152Q4G0S7 254 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 UBE2Q1Q7Z7E8 422 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 KIAA0825Q8IV33 1275 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 BRI3BPQ8WY22 251 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 ARHGAP39Q9C0H5 1083 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 MAPK8IP3Q9UPT6 1336 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 MGAMO43451 1857 aa10.74□□□□□ -0.69
CD44-232ENST00000531118 MTFR1Q15390 333 aa10.73□□□□□ -0.69
CD44-232ENST00000531118 KRT24Q2M2I5 525 aa10.73□□□□□ -0.69
CD44-232ENST00000531118 ANKRD18AQ8IVF6 992 aa10.73□□□□□ -0.69
CD44-232ENST00000531118 ANKRD13AQ8IZ07 590 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms