RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PDE3BQ13370 1112 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 MRPL58Q14197 206 aaKnown RBP5.17□□□□□ -1.58
CD44-229ENST00000528672 GRIK5Q16478 980 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 LCE3BQ5TA77 95 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 TXNDC11Q6PKC3 985 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 CEP120Q8N960 986 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 SPACA7Q96KW9 195 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 TCF12Q99081 682 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 BCO2Q9BYV7 579 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 SH2B1Q9NRF2 756 aaPredicted RBP5.17□□□□□ -1.58
CD44-229ENST00000528672 GADD45BO75293 160 aaPredicted RBP5.16□□□□□ -1.58
CD44-229ENST00000528672 EIF2AK2P19525 551 aaKnown RBP5.16□□□□□ -1.58
CD44-229ENST00000528672 MSL1Q68DK7 614 aa5.16□□□□□ -1.58
CD44-229ENST00000528672 GALNT12Q8IXK2 581 aa5.16□□□□□ -1.58
CD44-229ENST00000528672 PLD4Q96BZ4 506 aa5.16□□□□□ -1.58
CD44-229ENST00000528672 POP1Q99575 1024 aaKnown RBP5.16□□□□□ -1.58
CD44-229ENST00000528672 LACRTQ9GZZ8 138 aa5.16□□□□□ -1.58
CD44-229ENST00000528672 EIF4EBP3O60516 100 aaPredicted RBP5.15□□□□□ -1.59
CD44-229ENST00000528672 PRPF40AO75400 957 aaKnown RBP5.15□□□□□ -1.59
CD44-229ENST00000528672 SMNDC1O75940 238 aaKnown RBP eCLIP5.15□□□□□ -1.59
CD44-229ENST00000528672 DAB2P98082 770 aa5.15□□□□□ -1.59
CD44-229ENST00000528672 TRIM28Q13263 835 aaKnown RBP5.15□□□□□ -1.59
CD44-229ENST00000528672 RASIP1Q5U651 963 aa5.15□□□□□ -1.59
CD44-229ENST00000528672 NCAPG2Q86XI2 1143 aa5.15□□□□□ -1.59
CD44-229ENST00000528672 OSMRQ99650 979 aa5.15□□□□□ -1.59
CD44-229ENST00000528672 SMG9Q9H0W8 520 aaKnown RBP5.15□□□□□ -1.59
CD44-229ENST00000528672 BCL11AQ9H165 835 aa5.15□□□□□ -1.59
CD44-229ENST00000528672 DZANK1Q9NVP4 752 aa5.15□□□□□ -1.59
CD44-229ENST00000528672 A0A0A0MRY4 1105 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 APBA3O96018 575 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 EDN3P14138 238 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 TCF3P15923 654 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 GATA4P43694 442 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 FCGRTP55899 365 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 NRG1Q02297 640 aaPredicted RBP5.14□□□□□ -1.59
CD44-229ENST00000528672 FAAP100Q0VG06 881 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 PSMD2Q13200 908 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 GDF6Q6KF10 455 aaPredicted RBP5.14□□□□□ -1.59
CD44-229ENST00000528672 WFDC8Q8IUA0 241 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 FMR1NBQ8N0W7 255 aaPredicted RBP5.14□□□□□ -1.59
CD44-229ENST00000528672 C3orf58Q8NDZ4 430 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 ASAP3Q8TDY4 903 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 ABCB6Q9NP58 842 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 COPRSQ9NQ92 184 aa5.14□□□□□ -1.59
CD44-229ENST00000528672 C9orf172C9J069 976 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 USP17L7P0C7H9 530 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 XPCQ01831 940 aaPredicted RBP5.13□□□□□ -1.59
CD44-229ENST00000528672 FOXD4L6Q3SYB3 417 aaPredicted RBP5.13□□□□□ -1.59
CD44-229ENST00000528672 TRAPPC3LQ5T215 181 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 CEP135Q66GS9 1140 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 FOXD4L3Q6VB84 417 aaPredicted RBP5.13□□□□□ -1.59
CD44-229ENST00000528672 MPRIPQ6WCQ1 1025 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 TMC4Q7Z404 712 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 FBXO11Q86XK2 927 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 WNT8BQ93098 351 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 LENG1Q96BZ8 264 aaPredicted RBP5.13□□□□□ -1.59
CD44-229ENST00000528672 PBX4Q9BYU1 374 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 EHD4Q9H223 541 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 LIN7BQ9HAP6 207 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 VTI1BQ9UEU0 232 aa5.13□□□□□ -1.59
CD44-229ENST00000528672 SCO2A0A1W2PP80 73 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 PAGE1O75459 146 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 VAMP1P23763 118 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 GNA15P30679 374 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 HDLBPQ00341 1268 aaKnown RBP5.12□□□□□ -1.59
CD44-229ENST00000528672 MAP3K11Q16584 847 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 RSPO4Q2I0M5 234 aaPredicted RBP5.12□□□□□ -1.59
CD44-229ENST00000528672 NKAPLQ5M9Q1 402 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 STK35Q8TDR2 534 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 NXPE3Q969Y0 559 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 ADAM19Q9H013 955 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 DNAJC25Q9H1X3 360 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 PCDHGB7Q9Y5F8 929 aa5.12□□□□□ -1.59
CD44-229ENST00000528672 FAM229AH3BQW9 127 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 ECEL1O95672 775 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 CELA3AP09093 270 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 PTPRAP18433 802 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 EPHA1P21709 976 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 TNNI2P48788 182 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 COL19A1Q14993 1142 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 ZNF394Q53GI3 561 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 ARTNQ5T4W7 220 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 TPTE2Q6XPS3 522 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 TMEM102Q8N9M5 508 aaPredicted RBP5.11□□□□□ -1.59
CD44-229ENST00000528672 TMEM87AQ8NBN3 555 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 BHLHE41Q9C0J9 482 aaPredicted RBP5.11□□□□□ -1.59
CD44-229ENST00000528672 C12orf49Q9H741 205 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 AKAP2Q9Y2D5 859 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 AK5Q9Y6K8 562 aa5.11□□□□□ -1.59
CD44-229ENST00000528672 FAM177BA6PVY3 158 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 SORBS3O60504 671 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 ATP2B2Q01814 1243 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 ADGRE1Q14246 886 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 ZNF423Q2M1K9 1284 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 ALG1LQ6GMV1 187 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 IGF2-ASQ6U949 168 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 METTL16Q86W50 562 aaKnown RBP5.1□□□□□ -1.59
CD44-229ENST00000528672 CCNJLQ8IV13 435 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 CARD10Q9BWT7 1032 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 ZFP64Q9NPA5 681 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms