RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MLLT1Q03111 559 aaPredicted RBP12.72□□□□□ -0.37
VPS28-204ENST00000526054 IFIT5Q13325 482 aaKnown RBP12.72□□□□□ -0.37
VPS28-204ENST00000526054 PRAMEF18Q5VWM3 479 aa12.72□□□□□ -0.37
VPS28-204ENST00000526054 TTLL5Q6EMB2 1281 aa12.72□□□□□ -0.37
VPS28-204ENST00000526054 MOB2Q70IA6 237 aa12.72□□□□□ -0.37
VPS28-204ENST00000526054 APOBEC3FQ8IUX4 373 aaKnown RBP12.72□□□□□ -0.37
VPS28-204ENST00000526054 REM2Q8IYK8 340 aaPredicted RBP12.72□□□□□ -0.37
VPS28-204ENST00000526054 CSRNP1Q96S65 589 aa12.72□□□□□ -0.37
VPS28-204ENST00000526054 HDAC9Q9UKV0 1011 aa12.72□□□□□ -0.37
VPS28-204ENST00000526054 COL1A1P02452 1464 aaPredicted RBP12.72□□□□□ -0.37
VPS28-204ENST00000526054 ARAP2Q8WZ64 1704 aa12.71□□□□□ -0.37
VPS28-204ENST00000526054 TRIM27P14373 513 aa12.71□□□□□ -0.37
VPS28-204ENST00000526054 FTSJ3Q8IY81 847 aaKnown RBP12.71□□□□□ -0.37
VPS28-204ENST00000526054 UBE2Q2LH0YL09 131 aa12.7□□□□□ -0.38
VPS28-204ENST00000526054 TAF5LO75529 589 aa12.7□□□□□ -0.38
VPS28-204ENST00000526054 FOXO4P98177 505 aa12.7□□□□□ -0.38
VPS28-204ENST00000526054 CD209Q9NNX6 404 aa12.7□□□□□ -0.38
VPS28-204ENST00000526054 UTYO14607 1347 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 IRS2Q9Y4H2 1338 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 SNAP23O00161 211 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 MS4A1P11836 297 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 RGS19P49795 217 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 TAF7LQ5H9L4 462 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 INTS3Q68E01 1043 aaKnown RBP12.69□□□□□ -0.38
VPS28-204ENST00000526054 ZNF804AQ7Z570 1209 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.69□□□□□ -0.38
VPS28-204ENST00000526054 HELBQ8NG08 1087 aaPredicted RBP12.69□□□□□ -0.38
VPS28-204ENST00000526054 CLUAP1Q96AJ1 413 aa12.69□□□□□ -0.38
VPS28-204ENST00000526054 DLGAP5Q15398 846 aa12.68□□□□□ -0.38
VPS28-204ENST00000526054 CCDC57Q2TAC2 916 aa12.68□□□□□ -0.38
VPS28-204ENST00000526054 LMBR1LQ6UX01 489 aa12.68□□□□□ -0.38
VPS28-204ENST00000526054 C15orf52Q6ZUT6 534 aaKnown RBP12.68□□□□□ -0.38
VPS28-204ENST00000526054 ARMC9Q7Z3E5 817 aa12.68□□□□□ -0.38
VPS28-204ENST00000526054 DZIP1LQ8IYY4 767 aaKnown RBP12.68□□□□□ -0.38
VPS28-204ENST00000526054 ZBED3Q96IU2 234 aaPredicted RBP12.68□□□□□ -0.38
VPS28-204ENST00000526054 HDAC5Q9UQL6 1122 aa12.68□□□□□ -0.38
VPS28-204ENST00000526054 LAMB1P07942 1786 aa12.68□□□□□ -0.38
VPS28-204ENST00000526054 TNRC18O15417 2968 aaPredicted RBP12.67□□□□□ -0.38
VPS28-204ENST00000526054 F8W031 263 aaPredicted RBP12.67□□□□□ -0.38
VPS28-204ENST00000526054 NBPF7P0C2Y1 421 aaPredicted RBP12.67□□□□□ -0.38
VPS28-204ENST00000526054 UBTFL1P0CB47 393 aaPredicted RBP12.67□□□□□ -0.38
VPS28-204ENST00000526054 MKRN3Q13064 507 aaKnown RBP12.67□□□□□ -0.38
VPS28-204ENST00000526054 PRKG1Q13976 671 aa12.67□□□□□ -0.38
VPS28-204ENST00000526054 EPHA10Q5JZY3 1008 aa12.67□□□□□ -0.38
VPS28-204ENST00000526054 CTU1Q7Z7A3 348 aaKnown RBP12.67□□□□□ -0.38
VPS28-204ENST00000526054 CERS5Q8N5B7 392 aa12.67□□□□□ -0.38
VPS28-204ENST00000526054 ZNF594Q96JF6 807 aaPredicted RBP12.67□□□□□ -0.38
VPS28-204ENST00000526054 USP44Q9H0E7 712 aa12.67□□□□□ -0.38
VPS28-204ENST00000526054 CNNM1Q9NRU3 951 aa12.67□□□□□ -0.38
VPS28-204ENST00000526054 TNNQ9UQP3 1299 aa12.67□□□□□ -0.38
VPS28-204ENST00000526054 SSC5DA1L4H1 1573 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 MYO1BO43795 1136 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 IL1R1P14778 569 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 SREBF2Q12772 1141 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 LDHAL6AQ6ZMR3 332 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 TMEM57Q8N5G2 664 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 SUCLG2Q96I99 432 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 DEFB129Q9H1M3 183 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 ANGEL1Q9UNK9 670 aaKnown RBP12.66□□□□□ -0.38
VPS28-204ENST00000526054 JAG2Q9Y219 1238 aa12.66□□□□□ -0.38
VPS28-204ENST00000526054 OTOFQ9HC10 1997 aa12.65□□□□□ -0.38
VPS28-204ENST00000526054 PLIN1O60240 522 aa12.65□□□□□ -0.38
VPS28-204ENST00000526054 TBC1D8O95759 1140 aa12.65□□□□□ -0.38
VPS28-204ENST00000526054 GNAI3P08754 354 aa12.65□□□□□ -0.38
VPS28-204ENST00000526054 FKBP1AP62942 108 aaKnown RBP12.65□□□□□ -0.38
VPS28-204ENST00000526054 PTPN12Q05209 780 aaKnown RBP12.65□□□□□ -0.38
VPS28-204ENST00000526054 ITPRIPQ8IWB1 547 aa12.65□□□□□ -0.38
VPS28-204ENST00000526054 MTMR14Q8NCE2 650 aa12.65□□□□□ -0.38
VPS28-204ENST00000526054 PPP2R3BQ9Y5P8 575 aa12.65□□□□□ -0.38
VPS28-204ENST00000526054 CLRN2A0PK11 232 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 SPDYE2BA6NHP3 402 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 SPDYE6P0CI01 402 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 TM4SF4P48230 202 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 SOX10P56693 466 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 CFAP100Q494V2 611 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 ZNF296Q8WUU4 475 aaPredicted RBP12.64□□□□□ -0.39
VPS28-204ENST00000526054 MEIS3Q99687 375 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 VEZTQ9HBM0 779 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 FZD1Q9UP38 647 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 PCDHAC2Q9Y5I4 1007 aa12.64□□□□□ -0.39
VPS28-204ENST00000526054 CENPBP07199 599 aaPredicted RBP12.63□□□□□ -0.39
VPS28-204ENST00000526054 RLBP1P12271 317 aa12.63□□□□□ -0.39
VPS28-204ENST00000526054 RBM5P52756 815 aaKnown RBP eCLIP12.63□□□□□ -0.39
VPS28-204ENST00000526054 RABL6Q3YEC7 729 aaPredicted RBP12.63□□□□□ -0.39
VPS28-204ENST00000526054 LDLRAD1Q5T700 205 aa12.63□□□□□ -0.39
VPS28-204ENST00000526054 SPRYD7Q5W111 196 aa12.63□□□□□ -0.39
VPS28-204ENST00000526054 KAZALD1Q96I82 304 aa12.63□□□□□ -0.39
VPS28-204ENST00000526054 BICC1Q9H694 974 aaKnown RBP12.63□□□□□ -0.39
VPS28-204ENST00000526054 PDE4DIPQ5VU43 2346 aa12.62□□□□□ -0.39
VPS28-204ENST00000526054 GPR25O00155 361 aa12.62□□□□□ -0.39
VPS28-204ENST00000526054 PPP1R12BO60237 982 aaPredicted RBP12.62□□□□□ -0.39
VPS28-204ENST00000526054 UBE4AQ14139 1066 aa12.62□□□□□ -0.39
VPS28-204ENST00000526054 PKN2Q16513 984 aaKnown RBP12.62□□□□□ -0.39
VPS28-204ENST00000526054 MFSD14BQ5SR56 506 aa12.62□□□□□ -0.39
VPS28-204ENST00000526054 ANKRD44Q8N8A2 993 aa12.62□□□□□ -0.39
VPS28-204ENST00000526054 PANK1Q8TE04 598 aa12.62□□□□□ -0.39
VPS28-204ENST00000526054 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.62□□□□□ -0.39
VPS28-204ENST00000526054 LRRFIP2Q9Y608 721 aaKnown RBP12.62□□□□□ -0.39
VPS28-204ENST00000526054 FAM205AQ6ZU69 1335 aa12.62□□□□□ -0.39
VPS28-204ENST00000526054 MYH13Q9UKX3 1938 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms