RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 IKBKEQ14164 716 aa4.54□□□□□ -1.68
CD44-216ENST00000525293 USPL1Q5W0Q7 1092 aa4.54□□□□□ -1.68
CD44-216ENST00000525293 VN1R5Q7Z5H4 357 aa4.54□□□□□ -1.68
CD44-216ENST00000525293 GALNT12Q8IXK2 581 aa4.54□□□□□ -1.68
CD44-216ENST00000525293 FOXD4L4Q8WXT5 416 aaPredicted RBP4.54□□□□□ -1.68
CD44-216ENST00000525293 WNT8BQ93098 351 aa4.54□□□□□ -1.68
CD44-216ENST00000525293 OSGEPQ9NPF4 335 aa4.54□□□□□ -1.68
CD44-216ENST00000525293 A0A1W2PP55 124 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 C19orf57Q0VDD7 668 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 ZMYM1Q5SVZ6 1142 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 PRR23CQ6ZRP0 262 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 Q6ZS46 218 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 KIAA1211Q6ZU35 1233 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 UBASH3BQ8TF42 649 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 CITED4Q96RK1 184 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 UBL7Q96S82 380 aaPredicted RBP4.53□□□□□ -1.68
CD44-216ENST00000525293 FAM129BQ96TA1 746 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 BHLHE41Q9C0J9 482 aaPredicted RBP4.53□□□□□ -1.68
CD44-216ENST00000525293 NIF3L1Q9GZT8 377 aa4.53□□□□□ -1.68
CD44-216ENST00000525293 BIN2Q9UBW5 565 aaPredicted RBP4.53□□□□□ -1.68
CD44-216ENST00000525293 GPR182O15218 404 aa4.52□□□□□ -1.69
CD44-216ENST00000525293 CPNE3O75131 537 aaKnown RBP4.52□□□□□ -1.69
CD44-216ENST00000525293 SPRED3Q2MJR0 410 aa4.52□□□□□ -1.69
CD44-216ENST00000525293 CEP41Q9BYV8 373 aa4.52□□□□□ -1.69
CD44-216ENST00000525293 LIN7BQ9HAP6 207 aa4.52□□□□□ -1.69
CD44-216ENST00000525293 GNEQ9Y223 722 aaKnown RBP4.52□□□□□ -1.69
CD44-216ENST00000525293 A0A096LPE4 126 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 A0A1W2PPZ6 126 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 IGHA2P01877 340 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 ESRRAP11474 423 aaPredicted RBP4.51□□□□□ -1.69
CD44-216ENST00000525293 GRIA4P48058 902 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 CCNJLQ8IV13 435 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 TCF12Q99081 682 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 RUSC1Q9BVN2 902 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 EHD4Q9H223 541 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 NPHS2Q9NP85 383 aa4.51□□□□□ -1.69
CD44-216ENST00000525293 EIF1AYO14602 144 aaKnown RBP4.5□□□□□ -1.69
CD44-216ENST00000525293 SART1O43290 800 aaKnown RBP4.5□□□□□ -1.69
CD44-216ENST00000525293 GSTM4Q03013 218 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 KIAA0319Q5VV43 1072 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 ARMC10Q8N2F6 343 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 UTP4Q969X6 686 aaKnown RBP4.5□□□□□ -1.69
CD44-216ENST00000525293 CCDC74AQ96AQ1 378 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 DMRTB1Q96MA1 342 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 USP26Q9BXU7 913 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 RBCK1Q9BYM8 510 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 RNF208Q9H0X6 261 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 DNAJC25Q9H1X3 360 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 RAXQ9Y2V3 346 aa4.5□□□□□ -1.69
CD44-216ENST00000525293 SCO2A0A1W2PP80 73 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 DHX15O43143 795 aaKnown RBP4.49□□□□□ -1.69
CD44-216ENST00000525293 GADD45BO75293 160 aaPredicted RBP4.49□□□□□ -1.69
CD44-216ENST00000525293 PREPP48147 710 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 PCDH1Q08174 1060 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 ZNF423Q2M1K9 1284 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 TMC7Q7Z402 723 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 FAM46AQ96IP4 442 aaKnown RBP4.49□□□□□ -1.69
CD44-216ENST00000525293 CSRNP1Q96S65 589 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 KRTAP4-12Q9BQ66 201 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 CLEC4MQ9H2X3 399 aaPredicted RBP4.49□□□□□ -1.69
CD44-216ENST00000525293 SOX17Q9H6I2 414 aaPredicted RBP4.49□□□□□ -1.69
CD44-216ENST00000525293 STOML1Q9UBI4 398 aa4.49□□□□□ -1.69
CD44-216ENST00000525293 LOC100289279A0A1B0GTE1 492 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 DLGAP3O95886 979 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 FSTP19883 344 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 MAPK1P28482 360 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 UVSSAQ2YD98 709 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 LCE3BQ5TA77 95 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 NUTM2GQ5VZR2 741 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 ANKRD34AQ69YU3 496 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 FDX2Q6P4F2 183 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 EPS8L3Q8TE67 593 aaKnown RBP4.48□□□□□ -1.69
CD44-216ENST00000525293 ALKBH8Q96BT7 664 aaKnown RBP4.48□□□□□ -1.69
CD44-216ENST00000525293 DCTN4Q9UJW0 460 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 IVNS1ABPQ9Y6Y0 642 aa4.48□□□□□ -1.69
CD44-216ENST00000525293 MEGF11A6BM72 1044 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 BMP3P12645 472 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 PLCB3Q01970 1234 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 EXOSC6Q5RKV6 272 aaKnown RBP4.47□□□□□ -1.69
CD44-216ENST00000525293 TRIM42Q8IWZ5 723 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 C12orf50Q8NA57 414 aaPredicted RBP4.47□□□□□ -1.69
CD44-216ENST00000525293 MYRFLQ96LU7 910 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 TMPRSS13Q9BYE2 586 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 KCNF1Q9H3M0 494 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 ZNF576Q9H609 170 aa4.47□□□□□ -1.69
CD44-216ENST00000525293 TMEM238LA0A1B0GVL6 79 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 HMX2A2RU54 273 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 GAS2O43903 313 aaKnown RBP4.46□□□□□ -1.7
CD44-216ENST00000525293 ITPKAP23677 461 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 MAOBP27338 520 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 DSC3Q14574 896 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 POU4F3Q15319 338 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 PI16Q6UXB8 463 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 FAM20CQ8IXL6 584 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 SMG8Q8ND04 991 aaKnown RBP4.46□□□□□ -1.7
CD44-216ENST00000525293 C7orf69Q9H7B7 122 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 CYP4F12Q9HCS2 524 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 ABCB6Q9NP58 842 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 ZFP64Q9NPA5 681 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 NLRP2Q9NX02 1062 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms