RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 TBC1D22AQ8WUA7 517 aa20.26■□□□□ 0.83
LSM1-205ENST00000523511 FAM205AQ6ZU69 1335 aa20.26■□□□□ 0.83
LSM1-205ENST00000523511 SRGAP3O43295 1099 aa20.25■□□□□ 0.83
LSM1-205ENST00000523511 FMR1Q06787 632 aaKnown RBP eCLIP20.25■□□□□ 0.83
LSM1-205ENST00000523511 FBXO33Q7Z6M2 555 aa20.25■□□□□ 0.83
LSM1-205ENST00000523511 DZIP1LQ8IYY4 767 aaKnown RBP20.25■□□□□ 0.83
LSM1-205ENST00000523511 AIDAQ96BJ3 306 aa20.25■□□□□ 0.83
LSM1-205ENST00000523511 WDR33Q9C0J8 1336 aaKnown RBP20.25■□□□□ 0.83
LSM1-205ENST00000523511 WNT10BO00744 389 aa20.24■□□□□ 0.83
LSM1-205ENST00000523511 NF2P35240 595 aa20.24■□□□□ 0.83
LSM1-205ENST00000523511 MAP2K1Q02750 393 aaPredicted RBP20.24■□□□□ 0.83
LSM1-205ENST00000523511 SAPCD2Q86UD0 394 aa20.24■□□□□ 0.83
LSM1-205ENST00000523511 SIL1Q9H173 461 aa20.24■□□□□ 0.83
LSM1-205ENST00000523511 COPRSQ9NQ92 184 aa20.24■□□□□ 0.83
LSM1-205ENST00000523511 GNL3LQ9NVN8 582 aaKnown RBP20.24■□□□□ 0.83
LSM1-205ENST00000523511 RBM5P52756 815 aaKnown RBP eCLIP20.23■□□□□ 0.83
LSM1-205ENST00000523511 NBPF9Q3BBW0 867 aa20.23■□□□□ 0.83
LSM1-205ENST00000523511 MFSD14BQ5SR56 506 aa20.23■□□□□ 0.83
LSM1-205ENST00000523511 APOBEC3FQ8IUX4 373 aaKnown RBP20.23■□□□□ 0.83
LSM1-205ENST00000523511 VGLL2Q8N8G2 317 aa20.23■□□□□ 0.83
LSM1-205ENST00000523511 BEGAINQ9BUH8 593 aa20.23■□□□□ 0.83
LSM1-205ENST00000523511 GBA2Q9HCG7 927 aaPredicted RBP20.23■□□□□ 0.83
LSM1-205ENST00000523511 AKAP2Q9Y2D5 859 aa20.23■□□□□ 0.83
LSM1-205ENST00000523511 ADM5C9JUS6 153 aa20.22■□□□□ 0.83
LSM1-205ENST00000523511 F8W031 263 aaPredicted RBP20.22■□□□□ 0.83
LSM1-205ENST00000523511 FKBP1BP68106 108 aa20.22■□□□□ 0.83
LSM1-205ENST00000523511 MTX1Q13505 466 aa20.22■□□□□ 0.83
LSM1-205ENST00000523511 TMEM57Q8N5G2 664 aa20.22■□□□□ 0.83
LSM1-205ENST00000523511 MTMR14Q8NCE2 650 aa20.22■□□□□ 0.83
LSM1-205ENST00000523511 CAPNS2Q96L46 248 aa20.22■□□□□ 0.83
LSM1-205ENST00000523511 SPEF2Q9C093 1822 aa20.22■□□□□ 0.83
LSM1-205ENST00000523511 HSPA1AP0DMV8 641 aaKnown RBP20.21■□□□□ 0.83
LSM1-205ENST00000523511 HSPA1BP0DMV9 641 aaKnown RBP20.21■□□□□ 0.83
LSM1-205ENST00000523511 MAP2K2P36507 400 aa20.21■□□□□ 0.83
LSM1-205ENST00000523511 HUNKP57058 714 aa20.21■□□□□ 0.83
LSM1-205ENST00000523511 GRM1Q13255 1194 aa20.21■□□□□ 0.83
LSM1-205ENST00000523511 ATG9AQ7Z3C6 839 aa20.21■□□□□ 0.83
LSM1-205ENST00000523511 FGFR2P21802 821 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 BCAMP50895 628 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 ATP2B3Q16720 1220 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 ITPRIPQ8IWB1 547 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 CERS5Q8N5B7 392 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 CCDC102AQ96A19 550 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 CDCA5Q96FF9 252 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 SERPINA10Q9UK55 444 aa20.2■□□□□ 0.82
LSM1-205ENST00000523511 TTF2Q9UNY4 1162 aaKnown RBP20.2■□□□□ 0.82
LSM1-205ENST00000523511 CHAF1AQ13111 956 aaPredicted RBP20.19■□□□□ 0.82
LSM1-205ENST00000523511 G3BP1Q13283 466 aaKnown RBP eCLIP20.19■□□□□ 0.82
LSM1-205ENST00000523511 CFAP100Q494V2 611 aa20.19■□□□□ 0.82
LSM1-205ENST00000523511 CYP4F22Q6NT55 531 aa20.19■□□□□ 0.82
LSM1-205ENST00000523511 WDR66Q8TBY9 1149 aa20.19■□□□□ 0.82
LSM1-205ENST00000523511 CHMP4BQ9H444 224 aaKnown RBP20.19■□□□□ 0.82
LSM1-205ENST00000523511 JAG2Q9Y219 1238 aa20.19■□□□□ 0.82
LSM1-205ENST00000523511 SUGT1Q9Y2Z0 365 aa20.19■□□□□ 0.82
LSM1-205ENST00000523511 ASTN2O75129 1339 aaPredicted RBP20.19■□□□□ 0.82
LSM1-205ENST00000523511 SCN9AQ15858 1988 aa20.18■□□□□ 0.82
LSM1-205ENST00000523511 PPP2R3BQ9Y5P8 575 aa20.18■□□□□ 0.82
LSM1-205ENST00000523511 MAST3O60307 1309 aa20.18■□□□□ 0.82
LSM1-205ENST00000523511 HDLBPQ00341 1268 aaKnown RBP20.17■□□□□ 0.82
LSM1-205ENST00000523511 RGMBQ6NW40 437 aa20.17■□□□□ 0.82
LSM1-205ENST00000523511 MRIQ9BWK5 157 aa20.17■□□□□ 0.82
LSM1-205ENST00000523511 IQSEC3Q9UPP2 1182 aaPredicted RBP20.17■□□□□ 0.82
LSM1-205ENST00000523511 PA2G4Q9UQ80 394 aaKnown RBP20.17■□□□□ 0.82
LSM1-205ENST00000523511 SEMA3EO15041 775 aa20.16■□□□□ 0.82
LSM1-205ENST00000523511 NOGQ13253 232 aa20.16■□□□□ 0.82
LSM1-205ENST00000523511 TNFAIP1Q13829 316 aa20.16■□□□□ 0.82
LSM1-205ENST00000523511 TTLL12Q14166 644 aaPredicted RBP20.16■□□□□ 0.82
LSM1-205ENST00000523511 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.16■□□□□ 0.82
LSM1-205ENST00000523511 ZBED3Q96IU2 234 aaPredicted RBP20.16■□□□□ 0.82
LSM1-205ENST00000523511 TNNQ9UQP3 1299 aa20.16■□□□□ 0.82
LSM1-205ENST00000523511 SPDYE2BA6NHP3 402 aa20.15■□□□□ 0.82
LSM1-205ENST00000523511 SPDYE6P0CI01 402 aa20.15■□□□□ 0.82
LSM1-205ENST00000523511 ZNF157P51786 506 aaPredicted RBP20.15■□□□□ 0.82
LSM1-205ENST00000523511 SUPT20HL1Q3ZLR7 823 aa20.15■□□□□ 0.82
LSM1-205ENST00000523511 WBP1LQ9NX94 342 aa20.15■□□□□ 0.82
LSM1-205ENST00000523511 DENND2AQ9ULE3 1009 aa20.15■□□□□ 0.82
LSM1-205ENST00000523511 ZBTB7BO15156 539 aaPredicted RBP20.14■□□□□ 0.81
LSM1-205ENST00000523511 CTCFP49711 727 aaPredicted RBP20.14■□□□□ 0.81
LSM1-205ENST00000523511 ATP8B2P98198 1209 aa20.14■□□□□ 0.81
LSM1-205ENST00000523511 GORABQ5T7V8 394 aa20.14■□□□□ 0.81
LSM1-205ENST00000523511 DLK2Q6UY11 383 aa20.14■□□□□ 0.81
LSM1-205ENST00000523511 ARMC9Q7Z3E5 817 aa20.14■□□□□ 0.81
LSM1-205ENST00000523511 ZGPATQ8N5A5 531 aaKnown RBP20.14■□□□□ 0.81
LSM1-205ENST00000523511 TEKT1Q969V4 418 aa20.14■□□□□ 0.81
LSM1-205ENST00000523511 PRMT6Q96LA8 375 aaPredicted RBP20.14■□□□□ 0.81
LSM1-205ENST00000523511 DEFB129Q9H1M3 183 aa20.14■□□□□ 0.81
LSM1-205ENST00000523511 RCAN3Q9UKA8 241 aa20.14■□□□□ 0.81
LSM1-205ENST00000523511 CRKP46108 304 aa20.13■□□□□ 0.81
LSM1-205ENST00000523511 TNNI2P48788 182 aa20.13■□□□□ 0.81
LSM1-205ENST00000523511 OS9Q13438 667 aaPredicted RBP20.13■□□□□ 0.81
LSM1-205ENST00000523511 MVPQ14764 893 aaKnown RBP20.13■□□□□ 0.81
LSM1-205ENST00000523511 REM2Q8IYK8 340 aaPredicted RBP20.13■□□□□ 0.81
LSM1-205ENST00000523511 NEUROD6Q96NK8 337 aa20.13■□□□□ 0.81
LSM1-205ENST00000523511 VEZTQ9HBM0 779 aa20.13■□□□□ 0.81
LSM1-205ENST00000523511 PSME4Q14997 1843 aa20.12■□□□□ 0.81
LSM1-205ENST00000523511 CA12O43570 354 aa20.12■□□□□ 0.81
LSM1-205ENST00000523511 PPP1R12BO60237 982 aaPredicted RBP20.12■□□□□ 0.81
LSM1-205ENST00000523511 TFCP2Q12800 502 aa20.12■□□□□ 0.81
LSM1-205ENST00000523511 TMOD2Q9NZR1 351 aa20.12■□□□□ 0.81
LSM1-205ENST00000523511 ZBTB22O15209 634 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms