RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 PTPN12Q05209 780 aaKnown RBP37.15■■■■□ 3.54
SYNPO-203ENST00000518872 PAXIP1Q6ZW49 1069 aaPredicted RBP37.15■■■■□ 3.54
SYNPO-203ENST00000518872 CDCA5Q96FF9 252 aa37.15■■■■□ 3.54
SYNPO-203ENST00000518872 EYA2O00167 538 aa37.14■■■■□ 3.54
SYNPO-203ENST00000518872 MAP2K2P36507 400 aa37.14■■■■□ 3.54
SYNPO-203ENST00000518872 MTMR14Q8NCE2 650 aa37.14■■■■□ 3.54
SYNPO-203ENST00000518872 ZBED9Q6R2W3 1325 aa37.13■■■■□ 3.54
SYNPO-203ENST00000518872 GYG1P46976 350 aa37.13■■■■□ 3.53
SYNPO-203ENST00000518872 FBXO33Q7Z6M2 555 aa37.13■■■■□ 3.53
SYNPO-203ENST00000518872 C2orf69Q8N8R5 385 aa37.13■■■■□ 3.53
SYNPO-203ENST00000518872 TRIM27P14373 513 aa37.12■■■■□ 3.53
SYNPO-203ENST00000518872 HUNKP57058 714 aa37.12■■■■□ 3.53
SYNPO-203ENST00000518872 ATF7IPQ6VMQ6 1270 aa37.12■■■■□ 3.53
SYNPO-203ENST00000518872 MEIS3Q99687 375 aa37.12■■■■□ 3.53
SYNPO-203ENST00000518872 FOXN1O15353 648 aa37.11■■■■□ 3.53
SYNPO-203ENST00000518872 BCAR3O75815 825 aa37.11■■■■□ 3.53
SYNPO-203ENST00000518872 AIDAQ96BJ3 306 aa37.11■■■■□ 3.53
SYNPO-203ENST00000518872 LRRFIP2Q9Y608 721 aaKnown RBP37.11■■■■□ 3.53
SYNPO-203ENST00000518872 PAPPA2Q9BXP8 1791 aa37.1■■■■□ 3.53
SYNPO-203ENST00000518872 COL13A1Q5TAT6 717 aaPredicted RBP37.1■■■■□ 3.53
SYNPO-203ENST00000518872 GNAI3P08754 354 aa37.09■■■■□ 3.53
SYNPO-203ENST00000518872 FGFR2P21802 821 aa37.09■■■■□ 3.53
SYNPO-203ENST00000518872 FKBP1BP68106 108 aa37.09■■■■□ 3.53
SYNPO-203ENST00000518872 IFFO2Q5TF58 517 aa37.09■■■■□ 3.53
SYNPO-203ENST00000518872 CIAO1O76071 339 aa37.08■■■■□ 3.53
SYNPO-203ENST00000518872 PUM3Q15397 648 aaKnown RBP37.08■■■■□ 3.53
SYNPO-203ENST00000518872 ATG9AQ7Z3C6 839 aa37.08■■■■□ 3.53
SYNPO-203ENST00000518872 CAVIN4Q5BKX8 364 aa37.07■■■■□ 3.52
SYNPO-203ENST00000518872 CTCFP49711 727 aaPredicted RBP37.06■■■■□ 3.52
SYNPO-203ENST00000518872 DLGAP5Q15398 846 aa37.06■■■■□ 3.52
SYNPO-203ENST00000518872 APOBEC3FQ8IUX4 373 aaKnown RBP37.06■■■■□ 3.52
SYNPO-203ENST00000518872 COL1A1P02452 1464 aaPredicted RBP37.06■■■■□ 3.52
SYNPO-203ENST00000518872 GRM1Q13255 1194 aa37.05■■■■□ 3.52
SYNPO-203ENST00000518872 MFSD14BQ5SR56 506 aa37.05■■■■□ 3.52
SYNPO-203ENST00000518872 RGMBQ6NW40 437 aa37.05■■■■□ 3.52
SYNPO-203ENST00000518872 VPS37DQ86XT2 251 aa37.05■■■■□ 3.52
SYNPO-203ENST00000518872 IFIT1P09914 478 aaKnown RBP37.04■■■■□ 3.52
SYNPO-203ENST00000518872 NOGQ13253 232 aa37.04■■■■□ 3.52
SYNPO-203ENST00000518872 MTX1Q13505 466 aa37.04■■■■□ 3.52
SYNPO-203ENST00000518872 FRAT1Q92837 279 aaPredicted RBP37.04■■■■□ 3.52
SYNPO-203ENST00000518872 COPRSQ9NQ92 184 aa37.04■■■■□ 3.52
SYNPO-203ENST00000518872 PRDM10Q9NQV6 1147 aa37.04■■■■□ 3.52
SYNPO-203ENST00000518872 JAG2Q9Y219 1238 aa37.04■■■■□ 3.52
SYNPO-203ENST00000518872 AOC2O75106 756 aa37.03■■■■□ 3.52
SYNPO-203ENST00000518872 ZKSCAN2Q63HK3 967 aa37.02■■■■□ 3.52
SYNPO-203ENST00000518872 LPIN2Q92539 896 aa37.02■■■■□ 3.52
SYNPO-203ENST00000518872 MYH13Q9UKX3 1938 aa37.02■■■■□ 3.52
SYNPO-203ENST00000518872 SPDYE2BA6NHP3 402 aa37.01■■■■□ 3.52
SYNPO-203ENST00000518872 SPDYE6P0CI01 402 aa37.01■■■■□ 3.52
SYNPO-203ENST00000518872 CFAP100Q494V2 611 aa37.01■■■■□ 3.52
SYNPO-203ENST00000518872 CCDC102AQ96A19 550 aa37.01■■■■□ 3.52
SYNPO-203ENST00000518872 FAM155AB1AL88 458 aaPredicted RBP37■■■■□ 3.51
SYNPO-203ENST00000518872 F8W031 263 aaPredicted RBP37■■■■□ 3.51
SYNPO-203ENST00000518872 TBC1D22AQ8WUA7 517 aa37■■■■□ 3.51
SYNPO-203ENST00000518872 SCAF8Q9UPN6 1271 aaKnown RBP37■■■■□ 3.51
SYNPO-203ENST00000518872 TNNQ9UQP3 1299 aa37■■■■□ 3.51
SYNPO-203ENST00000518872 SLC5A1P13866 664 aa36.99■■■■□ 3.51
SYNPO-203ENST00000518872 IL15P40933 162 aaPredicted RBP36.99■■■■□ 3.51
SYNPO-203ENST00000518872 SERPINA10Q9UK55 444 aa36.99■■■■□ 3.51
SYNPO-203ENST00000518872 BCAMP50895 628 aa36.98■■■■□ 3.51
SYNPO-203ENST00000518872 BEGAINQ9BUH8 593 aa36.98■■■■□ 3.51
SYNPO-203ENST00000518872 MYO1BO43795 1136 aa36.97■■■■□ 3.51
SYNPO-203ENST00000518872 PRMT6Q96LA8 375 aaPredicted RBP36.97■■■■□ 3.51
SYNPO-203ENST00000518872 SIL1Q9H173 461 aa36.97■■■■□ 3.51
SYNPO-203ENST00000518872 CEP126Q9P2H0 1117 aa36.97■■■■□ 3.51
SYNPO-203ENST00000518872 TTF2Q9UNY4 1162 aaKnown RBP36.97■■■■□ 3.51
SYNPO-203ENST00000518872 HSPA8P11142 646 aaKnown RBP36.96■■■■□ 3.51
SYNPO-203ENST00000518872 NF2P35240 595 aa36.96■■■■□ 3.51
SYNPO-203ENST00000518872 CLUAP1Q96AJ1 413 aa36.96■■■■□ 3.51
SYNPO-203ENST00000518872 PCDHAC2Q9Y5I4 1007 aa36.96■■■■□ 3.51
SYNPO-203ENST00000518872 PPP2R3BQ9Y5P8 575 aa36.96■■■■□ 3.51
SYNPO-203ENST00000518872 CA12O43570 354 aa36.95■■■■□ 3.51
SYNPO-203ENST00000518872 SLC10A3P09131 477 aa36.95■■■■□ 3.51
SYNPO-203ENST00000518872 ZNF157P51786 506 aaPredicted RBP36.95■■■■□ 3.51
SYNPO-203ENST00000518872 IQSEC3Q9UPP2 1182 aaPredicted RBP36.95■■■■□ 3.51
SYNPO-203ENST00000518872 PA2G4Q9UQ80 394 aaKnown RBP36.95■■■■□ 3.51
SYNPO-203ENST00000518872 ZBTB22O15209 634 aa36.94■■■■□ 3.5
SYNPO-203ENST00000518872 FRAT2O75474 233 aaPredicted RBP36.94■■■■□ 3.5
SYNPO-203ENST00000518872 HDLBPQ00341 1268 aaKnown RBP36.94■■■■□ 3.5
SYNPO-203ENST00000518872 PRAMEF18Q5VWM3 479 aa36.94■■■■□ 3.5
SYNPO-203ENST00000518872 SUGT1Q9Y2Z0 365 aa36.94■■■■□ 3.5
SYNPO-203ENST00000518872 GNAI2P04899 355 aa36.93■■■■□ 3.5
SYNPO-203ENST00000518872 DEFB129Q9H1M3 183 aa36.93■■■■□ 3.5
SYNPO-203ENST00000518872 SRGAP3O43295 1099 aa36.92■■■■□ 3.5
SYNPO-203ENST00000518872 LBX1P52954 281 aa36.92■■■■□ 3.5
SYNPO-203ENST00000518872 ATP2B3Q16720 1220 aa36.92■■■■□ 3.5
SYNPO-203ENST00000518872 TMEM57Q8N5G2 664 aa36.92■■■■□ 3.5
SYNPO-203ENST00000518872 CHAF1AQ13111 956 aaPredicted RBP36.91■■■■□ 3.5
SYNPO-203ENST00000518872 ZIC5Q96T25 663 aa36.91■■■■□ 3.5
SYNPO-203ENST00000518872 MRIQ9BWK5 157 aa36.91■■■■□ 3.5
SYNPO-203ENST00000518872 RBM5P52756 815 aaKnown RBP eCLIP36.9■■■■□ 3.5
SYNPO-203ENST00000518872 TNS4Q8IZW8 715 aa36.9■■■■□ 3.5
SYNPO-203ENST00000518872 SPDYE2Q495Y8 402 aa36.89■■■■□ 3.5
SYNPO-203ENST00000518872 RASAL3Q86YV0 1011 aa36.89■■■■□ 3.5
SYNPO-203ENST00000518872 AOX1Q06278 1338 aa36.88■■■■□ 3.49
SYNPO-203ENST00000518872 CRKP46108 304 aa36.88■■■■□ 3.49
SYNPO-203ENST00000518872 GRIK5Q16478 980 aa36.88■■■■□ 3.49
SYNPO-203ENST00000518872 AKAP11Q9UKA4 1901 aa36.87■■■■□ 3.49
SYNPO-203ENST00000518872 CLRN2A0PK11 232 aa36.87■■■■□ 3.49
SYNPO-203ENST00000518872 MOB2Q70IA6 237 aa36.87■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms