RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 FBXO33Q7Z6M2 555 aa14.35□□□□□ -0.11
VCAN-212ENST00000515397 VPS37DQ86XT2 251 aa14.35□□□□□ -0.11
VCAN-212ENST00000515397 SULF1Q8IWU6 871 aa14.35□□□□□ -0.11
VCAN-212ENST00000515397 TDRD7Q8NHU6 1098 aaKnown RBP14.35□□□□□ -0.11
VCAN-212ENST00000515397 C1orf115Q9H7X2 142 aa14.35□□□□□ -0.11
VCAN-212ENST00000515397 SRGAP3O43295 1099 aa14.34□□□□□ -0.11
VCAN-212ENST00000515397 PANK1Q8TE04 598 aa14.34□□□□□ -0.11
VCAN-212ENST00000515397 PNMA6EA0A0J9YXQ4 647 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 RASSF10A6NK89 507 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 AOC2O75106 756 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 FRAT2O75474 233 aaPredicted RBP14.33□□□□□ -0.12
VCAN-212ENST00000515397 GNAI2P04899 355 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 HSPA1AP0DMV8 641 aaKnown RBP14.33□□□□□ -0.12
VCAN-212ENST00000515397 HSPA1BP0DMV9 641 aaKnown RBP14.33□□□□□ -0.12
VCAN-212ENST00000515397 FGFR2P21802 821 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 SAPCD2Q86UD0 394 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 DZIP1LQ8IYY4 767 aaKnown RBP14.33□□□□□ -0.12
VCAN-212ENST00000515397 CDCA5Q96FF9 252 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 TLL2Q9Y6L7 1015 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 AOX1Q06278 1338 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 MYO3BQ8WXR4 1341 aa14.33□□□□□ -0.12
VCAN-212ENST00000515397 WDR33Q9C0J8 1336 aaKnown RBP14.33□□□□□ -0.12
VCAN-212ENST00000515397 RBM5P52756 815 aaKnown RBP eCLIP14.32□□□□□ -0.12
VCAN-212ENST00000515397 PUM3Q15397 648 aaKnown RBP14.32□□□□□ -0.12
VCAN-212ENST00000515397 CFAP100Q494V2 611 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 CAVIN4Q5BKX8 364 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 MFSD14BQ5SR56 506 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 MOB2Q70IA6 237 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 ITPRIPQ8IWB1 547 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 FTSJ3Q8IY81 847 aaKnown RBP14.32□□□□□ -0.12
VCAN-212ENST00000515397 CAPNS2Q96L46 248 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 CEP126Q9P2H0 1117 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 HDAC9Q9UKV0 1011 aa14.32□□□□□ -0.12
VCAN-212ENST00000515397 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.32□□□□□ -0.12
VCAN-212ENST00000515397 CLRN2A0PK11 232 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 IFIT1P09914 478 aaKnown RBP14.31□□□□□ -0.12
VCAN-212ENST00000515397 ADORA1P30542 326 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 HUNKP57058 714 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 TIMM10P62072 90 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 PRKG1Q13976 671 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 DLGAP5Q15398 846 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 PRMT6Q96LA8 375 aaPredicted RBP14.31□□□□□ -0.12
VCAN-212ENST00000515397 GBA2Q9HCG7 927 aaPredicted RBP14.31□□□□□ -0.12
VCAN-212ENST00000515397 HDAC5Q9UQL6 1122 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 FAM205AQ6ZU69 1335 aa14.31□□□□□ -0.12
VCAN-212ENST00000515397 A0A1B0GUL6 1792 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 CAPN15O75808 1086 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 SLC5A1P13866 664 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 TFCP2Q12800 502 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 ATP2B3Q16720 1220 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 LPIN2Q92539 896 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 ZBED3Q96IU2 234 aaPredicted RBP14.3□□□□□ -0.12
VCAN-212ENST00000515397 ZIC5Q96T25 663 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 COPRSQ9NQ92 184 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.3□□□□□ -0.12
VCAN-212ENST00000515397 TTF2Q9UNY4 1162 aaKnown RBP14.3□□□□□ -0.12
VCAN-212ENST00000515397 FZD1Q9UP38 647 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 ZNF609O15014 1411 aa14.3□□□□□ -0.12
VCAN-212ENST00000515397 PSME4Q14997 1843 aa14.29□□□□□ -0.12
VCAN-212ENST00000515397 CIAO1O76071 339 aa14.29□□□□□ -0.12
VCAN-212ENST00000515397 IL15P40933 162 aaPredicted RBP14.29□□□□□ -0.12
VCAN-212ENST00000515397 C2orf69Q8N8R5 385 aa14.29□□□□□ -0.12
VCAN-212ENST00000515397 UBE2Q2LH0YL09 131 aa14.28□□□□□ -0.12
VCAN-212ENST00000515397 ZBTB7BO15156 539 aaPredicted RBP14.28□□□□□ -0.12
VCAN-212ENST00000515397 FOXN1O15353 648 aa14.28□□□□□ -0.12
VCAN-212ENST00000515397 PHKA1P46020 1223 aa14.28□□□□□ -0.12
VCAN-212ENST00000515397 COL13A1Q5TAT6 717 aaPredicted RBP14.28□□□□□ -0.12
VCAN-212ENST00000515397 YTHDC1Q96MU7 727 aaKnown RBP14.28□□□□□ -0.12
VCAN-212ENST00000515397 VEZTQ9HBM0 779 aa14.28□□□□□ -0.12
VCAN-212ENST00000515397 ZNF646O15015 1829 aaPredicted RBP14.27□□□□□ -0.12
VCAN-212ENST00000515397 SPDYE2BA6NHP3 402 aa14.27□□□□□ -0.13
VCAN-212ENST00000515397 SPDYE6P0CI01 402 aa14.27□□□□□ -0.13
VCAN-212ENST00000515397 FKBP1AP62942 108 aaKnown RBP14.27□□□□□ -0.13
VCAN-212ENST00000515397 MTX1Q13505 466 aa14.27□□□□□ -0.13
VCAN-212ENST00000515397 TDRD3Q9H7E2 651 aaKnown RBP14.27□□□□□ -0.13
VCAN-212ENST00000515397 RCAN3Q9UKA8 241 aa14.27□□□□□ -0.13
VCAN-212ENST00000515397 TRPM7Q96QT4 1865 aa14.27□□□□□ -0.13
VCAN-212ENST00000515397 PITPNM2Q9BZ72 1349 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 ECE1P42892 770 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 CRKP46108 304 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 ATP8B2P98198 1209 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 G3BP1Q13283 466 aaKnown RBP eCLIP14.26□□□□□ -0.13
VCAN-212ENST00000515397 TTLL12Q14166 644 aaPredicted RBP14.26□□□□□ -0.13
VCAN-212ENST00000515397 NEUROD6Q96NK8 337 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 DEFB129Q9H1M3 183 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 WBP1LQ9NX94 342 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 TSKSQ9UJT2 592 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 FBXO3Q9UK99 471 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 COG6Q9Y2V7 657 aa14.26□□□□□ -0.13
VCAN-212ENST00000515397 ZNF157P51786 506 aaPredicted RBP14.25□□□□□ -0.13
VCAN-212ENST00000515397 CACNB3P54284 484 aa14.25□□□□□ -0.13
VCAN-212ENST00000515397 C20orf194Q5TEA3 1177 aa14.25□□□□□ -0.13
VCAN-212ENST00000515397 CCDC102BQ68D86 513 aa14.25□□□□□ -0.13
VCAN-212ENST00000515397 RGMBQ6NW40 437 aa14.25□□□□□ -0.13
VCAN-212ENST00000515397 MTMR14Q8NCE2 650 aa14.25□□□□□ -0.13
VCAN-212ENST00000515397 A0A1B0GUL7 405 aa14.24□□□□□ -0.13
VCAN-212ENST00000515397 TCP10L2B9ZVM9 353 aa14.24□□□□□ -0.13
VCAN-212ENST00000515397 POLA2Q14181 598 aa14.24□□□□□ -0.13
VCAN-212ENST00000515397 AIDAQ96BJ3 306 aa14.24□□□□□ -0.13
VCAN-212ENST00000515397 XAGE2Q96GT9 111 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms