RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 GNAI3P08754 354 aa16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 TRIM27P14373 513 aa16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 FKBP1AP62942 108 aaKnown RBP16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 MAP2K1Q02750 393 aaPredicted RBP16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 CAVIN4Q5BKX8 364 aa16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 FAM84BQ96KN1 310 aaPredicted RBP16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 MEIS3Q99687 375 aa16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 GBA2Q9HCG7 927 aaPredicted RBP16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 LRRFIP2Q9Y608 721 aaKnown RBP16.48■□□□□ 0.23
PDLIM3-210ENST00000514308 RFX5P48382 616 aaPredicted RBP16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 HUNKP57058 714 aa16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 PTPN12Q05209 780 aaKnown RBP16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 PUM3Q15397 648 aaKnown RBP16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 CERS5Q8N5B7 392 aa16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 VGLL2Q8N8G2 317 aa16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 TDRD7Q8NHU6 1098 aaKnown RBP16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 CDCA5Q96FF9 252 aa16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 FBXO3Q9UK99 471 aa16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 JAG2Q9Y219 1238 aa16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 TRPM7Q96QT4 1865 aa16.47■□□□□ 0.23
PDLIM3-210ENST00000514308 FAM205AQ6ZU69 1335 aa16.46■□□□□ 0.23
PDLIM3-210ENST00000514308 IFIT1P09914 478 aaKnown RBP16.46■□□□□ 0.23
PDLIM3-210ENST00000514308 DLGAP5Q15398 846 aa16.46■□□□□ 0.23
PDLIM3-210ENST00000514308 ZKSCAN2Q63HK3 967 aa16.46■□□□□ 0.23
PDLIM3-210ENST00000514308 WBP1LQ9NX94 342 aa16.46■□□□□ 0.23
PDLIM3-210ENST00000514308 A0A1B0GUL6 1792 aa16.46■□□□□ 0.22
PDLIM3-210ENST00000514308 F8W031 263 aaPredicted RBP16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 FRAT2O75474 233 aaPredicted RBP16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 CIAO1O76071 339 aa16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 MAP2K2P36507 400 aa16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 MFSD14BQ5SR56 506 aa16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 FBXO33Q7Z6M2 555 aa16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 APOBEC3FQ8IUX4 373 aaKnown RBP16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 CLUAP1Q96AJ1 413 aa16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 BEGAINQ9BUH8 593 aa16.45■□□□□ 0.22
PDLIM3-210ENST00000514308 MYO1BO43795 1136 aa16.44■□□□□ 0.22
PDLIM3-210ENST00000514308 FKBP1BP68106 108 aa16.44■□□□□ 0.22
PDLIM3-210ENST00000514308 MTMR14Q8NCE2 650 aa16.44■□□□□ 0.22
PDLIM3-210ENST00000514308 SIL1Q9H173 461 aa16.44■□□□□ 0.22
PDLIM3-210ENST00000514308 FOXN1O15353 648 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 SLC5A1P13866 664 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 CTCFP49711 727 aaPredicted RBP16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 NOGQ13253 232 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 COL13A1Q5TAT6 717 aaPredicted RBP16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 RGMBQ6NW40 437 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 ATG9AQ7Z3C6 839 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 LPIN2Q92539 896 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 ZBED3Q96IU2 234 aaPredicted RBP16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 CEP126Q9P2H0 1117 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 RCAN3Q9UKA8 241 aa16.43■□□□□ 0.22
PDLIM3-210ENST00000514308 SRGAP3O43295 1099 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 AOC2O75106 756 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 GNAI2P04899 355 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 FGFR2P21802 821 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 NF2P35240 595 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 IL15P40933 162 aaPredicted RBP16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 BCAMP50895 628 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 RBM5P52756 815 aaKnown RBP eCLIP16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 CFAP100Q494V2 611 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 FTSJ3Q8IY81 847 aaKnown RBP16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 TBC1D22AQ8WUA7 517 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 CCDC102AQ96A19 550 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 COPRSQ9NQ92 184 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 PPP4R2Q9NY27 417 aa16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 TTF2Q9UNY4 1162 aaKnown RBP16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 SCAF8Q9UPN6 1271 aaKnown RBP16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 IQSEC3Q9UPP2 1182 aaPredicted RBP16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 ZNF646O15015 1829 aaPredicted RBP16.42■□□□□ 0.22
PDLIM3-210ENST00000514308 SPDYE2BA6NHP3 402 aa16.41■□□□□ 0.22
PDLIM3-210ENST00000514308 SPDYE6P0CI01 402 aa16.41■□□□□ 0.22
PDLIM3-210ENST00000514308 ZNF157P51786 506 aaPredicted RBP16.41■□□□□ 0.22
PDLIM3-210ENST00000514308 CHAF1AQ13111 956 aaPredicted RBP16.41■□□□□ 0.22
PDLIM3-210ENST00000514308 MTX1Q13505 466 aa16.41■□□□□ 0.22
PDLIM3-210ENST00000514308 SERPINA10Q9UK55 444 aa16.41■□□□□ 0.22
PDLIM3-210ENST00000514308 TNNQ9UQP3 1299 aa16.41■□□□□ 0.22
PDLIM3-210ENST00000514308 ATP2B3Q16720 1220 aa16.4■□□□□ 0.22
PDLIM3-210ENST00000514308 IFFO2Q5TF58 517 aa16.4■□□□□ 0.22
PDLIM3-210ENST00000514308 PRAMEF18Q5VWM3 479 aa16.4■□□□□ 0.22
PDLIM3-210ENST00000514308 TMEM57Q8N5G2 664 aa16.4■□□□□ 0.22
PDLIM3-210ENST00000514308 PA2G4Q9UQ80 394 aaKnown RBP16.4■□□□□ 0.22
PDLIM3-210ENST00000514308 TTLL12Q14166 644 aaPredicted RBP16.39■□□□□ 0.21
PDLIM3-210ENST00000514308 PRMT6Q96LA8 375 aaPredicted RBP16.39■□□□□ 0.21
PDLIM3-210ENST00000514308 DEFB129Q9H1M3 183 aa16.39■□□□□ 0.21
PDLIM3-210ENST00000514308 PRDM10Q9NQV6 1147 aa16.39■□□□□ 0.21
PDLIM3-210ENST00000514308 POLR2AP24928 1970 aaKnown RBP16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 THSD7BQ9C0I4 1608 aa16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 COL1A1P02452 1464 aaPredicted RBP16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 CLRN2A0PK11 232 aa16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 CA12O43570 354 aa16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 DZIP1LQ8IYY4 767 aaKnown RBP16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 TNS4Q8IZW8 715 aa16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 VEZTQ9HBM0 779 aa16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 GNL3LQ9NVN8 582 aaKnown RBP16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 PCDHAC2Q9Y5I4 1007 aa16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 PPP2R3BQ9Y5P8 575 aa16.38■□□□□ 0.21
PDLIM3-210ENST00000514308 LBX1P52954 281 aa16.37■□□□□ 0.21
PDLIM3-210ENST00000514308 HDLBPQ00341 1268 aaKnown RBP16.37■□□□□ 0.21
PDLIM3-210ENST00000514308 TNFAIP1Q13829 316 aa16.37■□□□□ 0.21
PDLIM3-210ENST00000514308 WDR66Q8TBY9 1149 aa16.37■□□□□ 0.21
PDLIM3-210ENST00000514308 SUGT1Q9Y2Z0 365 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms