RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 G2E3Q7L622 706 aa26.08■■□□□ 1.77
SQSTM1-215ENST00000514093 ERO1AQ96HE7 468 aa26.08■■□□□ 1.77
SQSTM1-215ENST00000514093 COL1A1P02452 1464 aaPredicted RBP26.07■■□□□ 1.76
SQSTM1-215ENST00000514093 GJA5P36382 358 aa26.07■■□□□ 1.76
SQSTM1-215ENST00000514093 CAP1Q01518 475 aa26.07■■□□□ 1.76
SQSTM1-215ENST00000514093 NBPF12Q5TAG4 269 aaPredicted RBP26.07■■□□□ 1.76
SQSTM1-215ENST00000514093 AOX1Q06278 1338 aa26.07■■□□□ 1.76
SQSTM1-215ENST00000514093 TAF5LO75529 589 aa26.06■■□□□ 1.76
SQSTM1-215ENST00000514093 CFAP100Q494V2 611 aa26.06■■□□□ 1.76
SQSTM1-215ENST00000514093 HELBQ8NG08 1087 aaPredicted RBP26.06■■□□□ 1.76
SQSTM1-215ENST00000514093 PRMT6Q96LA8 375 aaPredicted RBP26.06■■□□□ 1.76
SQSTM1-215ENST00000514093 VEZTQ9HBM0 779 aa26.06■■□□□ 1.76
SQSTM1-215ENST00000514093 JAG2Q9Y219 1238 aa26.06■■□□□ 1.76
SQSTM1-215ENST00000514093 MTMR14Q8NCE2 650 aa26.05■■□□□ 1.76
SQSTM1-215ENST00000514093 TSR2Q969E8 191 aaKnown RBP26.05■■□□□ 1.76
SQSTM1-215ENST00000514093 PTPN18Q99952 460 aa26.05■■□□□ 1.76
SQSTM1-215ENST00000514093 CHMP4AQ9BY43 222 aa26.05■■□□□ 1.76
SQSTM1-215ENST00000514093 EFCC1Q9HA90 598 aa26.05■■□□□ 1.76
SQSTM1-215ENST00000514093 PPP2R3BQ9Y5P8 575 aa26.05■■□□□ 1.76
SQSTM1-215ENST00000514093 USP2O75604 605 aaPredicted RBP26.04■■□□□ 1.76
SQSTM1-215ENST00000514093 SUPT20HL1Q3ZLR7 823 aa26.04■■□□□ 1.76
SQSTM1-215ENST00000514093 PLA2G12BQ9BX93 195 aa26.04■■□□□ 1.76
SQSTM1-215ENST00000514093 STK31Q9BXU1 1019 aa26.04■■□□□ 1.76
SQSTM1-215ENST00000514093 MYO1BO43795 1136 aa26.03■■□□□ 1.76
SQSTM1-215ENST00000514093 CSF1RP07333 972 aa26.03■■□□□ 1.76
SQSTM1-215ENST00000514093 GCKRQ14397 625 aa26.03■■□□□ 1.76
SQSTM1-215ENST00000514093 OTUD7BQ6GQQ9 843 aa26.03■■□□□ 1.76
SQSTM1-215ENST00000514093 IRS2Q9Y4H2 1338 aa26.03■■□□□ 1.76
SQSTM1-215ENST00000514093 SPDYE2BA6NHP3 402 aa26.02■■□□□ 1.76
SQSTM1-215ENST00000514093 SPDYE6P0CI01 402 aa26.02■■□□□ 1.76
SQSTM1-215ENST00000514093 IREB2P48200 963 aaKnown RBP26.02■■□□□ 1.76
SQSTM1-215ENST00000514093 CASP7P55210 303 aa26.02■■□□□ 1.76
SQSTM1-215ENST00000514093 SP3Q02447 781 aa26.02■■□□□ 1.76
SQSTM1-215ENST00000514093 ARMC5Q96C12 935 aa26.02■■□□□ 1.76
SQSTM1-215ENST00000514093 BRCA2P51587 3418 aa26.02■■□□□ 1.76
SQSTM1-215ENST00000514093 SLC4A2P04920 1241 aa26.01■■□□□ 1.75
SQSTM1-215ENST00000514093 RBM5P52756 815 aaKnown RBP eCLIP26.01■■□□□ 1.75
SQSTM1-215ENST00000514093 KIAA0100Q14667 2235 aaKnown RBP26.01■■□□□ 1.75
SQSTM1-215ENST00000514093 RASA3Q14644 834 aa26■■□□□ 1.75
SQSTM1-215ENST00000514093 ELP3Q9H9T3 547 aa26■■□□□ 1.75
SQSTM1-215ENST00000514093 ANKRD18BA2A2Z9 1011 aa25.99■■□□□ 1.75
SQSTM1-215ENST00000514093 UNCXA6NJT0 531 aa25.99■■□□□ 1.75
SQSTM1-215ENST00000514093 ANKRD13AQ8IZ07 590 aa25.99■■□□□ 1.75
SQSTM1-215ENST00000514093 TESPA1A2RU30 521 aaPredicted RBP25.98■■□□□ 1.75
SQSTM1-215ENST00000514093 IL1R1P14778 569 aa25.98■■□□□ 1.75
SQSTM1-215ENST00000514093 FXR1P51114 621 aaKnown RBP eCLIP25.98■■□□□ 1.754e-6■□□□□ 9.8
SQSTM1-215ENST00000514093 OPTNQ96CV9 577 aa25.98■■□□□ 1.75
SQSTM1-215ENST00000514093 ECM29Q5VYK3 1845 aa25.98■■□□□ 1.75
SQSTM1-215ENST00000514093 RBBP6Q7Z6E9 1792 aaKnown RBP25.97■■□□□ 1.75
SQSTM1-215ENST00000514093 C15orf52Q6ZUT6 534 aaKnown RBP25.97■■□□□ 1.75
SQSTM1-215ENST00000514093 ZNF804AQ7Z570 1209 aa25.97■■□□□ 1.75
SQSTM1-215ENST00000514093 CNKSR2Q8WXI2 1034 aa25.97■■□□□ 1.75
SQSTM1-215ENST00000514093 TMEM106CQ9BVX2 250 aa25.97■■□□□ 1.75
SQSTM1-215ENST00000514093 LAMB1P07942 1786 aa25.97■■□□□ 1.75
SQSTM1-215ENST00000514093 MYCP01106 439 aaPredicted RBP25.96■■□□□ 1.75
SQSTM1-215ENST00000514093 TWISTNBQ3B726 338 aaPredicted RBP25.96■■□□□ 1.75
SQSTM1-215ENST00000514093 CHMP3Q9Y3E7 222 aa25.96■■□□□ 1.75
SQSTM1-215ENST00000514093 PLIN1O60240 522 aa25.95■■□□□ 1.74
SQSTM1-215ENST00000514093 CDAN1Q8IWY9 1227 aa25.95■■□□□ 1.74
SQSTM1-215ENST00000514093 ZNF333Q96JL9 665 aa25.95■■□□□ 1.74
SQSTM1-215ENST00000514093 MS4A4AQ96JQ5 239 aa25.95■■□□□ 1.74
SQSTM1-215ENST00000514093 MYH16Q9H6N6 1097 aa25.95■■□□□ 1.74
SQSTM1-215ENST00000514093 COLQQ9Y215 455 aaPredicted RBP25.95■■□□□ 1.74
SQSTM1-215ENST00000514093 PTCH2Q9Y6C5 1203 aa25.95■■□□□ 1.74
SQSTM1-215ENST00000514093 FKBP1AP62942 108 aaKnown RBP25.94■■□□□ 1.74
SQSTM1-215ENST00000514093 FLIIQ13045 1269 aa25.94■■□□□ 1.74
SQSTM1-215ENST00000514093 IFIT5Q13325 482 aaKnown RBP25.93■■□□□ 1.74
SQSTM1-215ENST00000514093 FKBP5Q13451 457 aaPredicted RBP25.93■■□□□ 1.74
SQSTM1-215ENST00000514093 DNAAF4Q8WXU2 420 aa25.93■■□□□ 1.74
SQSTM1-215ENST00000514093 BRI3BPQ8WY22 251 aa25.93■■□□□ 1.74
SQSTM1-215ENST00000514093 TDRD3Q9H7E2 651 aaKnown RBP25.93■■□□□ 1.74
SQSTM1-215ENST00000514093 PRKRIP1Q9H875 184 aaPredicted RBP25.93■■□□□ 1.74
SQSTM1-215ENST00000514093 ZNF70Q9UC06 446 aaPredicted RBP25.93■■□□□ 1.74
SQSTM1-215ENST00000514093 FOXO4P98177 505 aa25.92■■□□□ 1.74
SQSTM1-215ENST00000514093 TAF1CQ15572 869 aaPredicted RBP25.92■■□□□ 1.74
SQSTM1-215ENST00000514093 SLC9C1Q4G0N8 1177 aa25.92■■□□□ 1.74
SQSTM1-215ENST00000514093 LINS1Q8NG48 757 aa25.92■■□□□ 1.74
SQSTM1-215ENST00000514093 ZNF594Q96JF6 807 aaPredicted RBP25.92■■□□□ 1.74
SQSTM1-215ENST00000514093 SLC4A8Q2Y0W8 1093 aa25.91■■□□□ 1.74
SQSTM1-215ENST00000514093 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.91■■□□□ 1.74
SQSTM1-215ENST00000514093 OTOFQ9HC10 1997 aa25.91■■□□□ 1.74
SQSTM1-215ENST00000514093 CCL15-CCL14A0A0B4J2E2 113 aa25.9■■□□□ 1.74
SQSTM1-215ENST00000514093 CCL15Q16663 113 aa25.9■■□□□ 1.74
SQSTM1-215ENST00000514093 SPDYE2Q495Y8 402 aa25.9■■□□□ 1.74
SQSTM1-215ENST00000514093 NBPF11Q86T75 865 aa25.9■■□□□ 1.74
SQSTM1-215ENST00000514093 TEPSINQ96N21 525 aa25.9■■□□□ 1.74
SQSTM1-215ENST00000514093 ZFYVE28Q9HCC9 887 aa25.9■■□□□ 1.74
SQSTM1-215ENST00000514093 TCP10L2B9ZVM9 353 aa25.89■■□□□ 1.74
SQSTM1-215ENST00000514093 TNFAIP1Q13829 316 aa25.89■■□□□ 1.74
SQSTM1-215ENST00000514093 FAM43AQ8N2R8 423 aa25.89■■□□□ 1.74
SQSTM1-215ENST00000514093 TTF2Q9UNY4 1162 aaKnown RBP25.89■■□□□ 1.74
SQSTM1-215ENST00000514093 A0A1B0GUL6 1792 aa25.89■■□□□ 1.73
SQSTM1-215ENST00000514093 VGLL4Q14135 290 aa25.88■■□□□ 1.73
SQSTM1-215ENST00000514093 MFSD14BQ5SR56 506 aa25.88■■□□□ 1.73
SQSTM1-215ENST00000514093 TMEM39BQ9GZU3 492 aa25.88■■□□□ 1.73
SQSTM1-215ENST00000514093 GTF2A2P52657 109 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 MAP3K9P80192 1104 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 ARHGEF6Q15052 776 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 EPHA10Q5JZY3 1008 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 LMBR1LQ6UX01 489 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms