RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 RIPOR2Q9Y4F9 1068 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 SCINQ9Y6U3 715 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 FGD6Q6ZV73 1430 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 IGSF3O75054 1194 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 METAP2P50579 478 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 ZNF444Q8N0Y2 327 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 KLHL34Q8N239 644 aa12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 SYTL4Q96C24 671 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-217ENST00000512946 ESRRGP62508 458 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 TTC22Q5TAA0 569 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 CCDC68Q9H2F9 335 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 ARL1P40616 181 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 PLCB3Q01970 1234 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 SYNCQ9H7C4 482 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 ZNF500O60304 480 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 HPDP32754 393 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 NLRP6P59044 892 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 NAA16Q6N069 864 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 MMRN2Q9H8L6 949 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 EXOC6BQ9Y2D4 811 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 CCHCR1Q8TD31 782 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 DNAJC5BQ9UF47 199 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 SPG7Q9UQ90 795 aa12.6□□□□□ -0.39
LIMCH1-217ENST00000512946 DYNC1I2Q13409 638 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 LZTFL1Q9NQ48 299 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 VGLL3A8MV65 326 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 SPTLC2O15270 562 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 FLOT1O75955 427 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 PRPF31Q8WWY3 499 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 IFNKQ9P0W0 207 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 GOLGA8QA0A0J9YX86 632 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 GOLGA8OA6NCC3 632 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 GOLGA8NF8WBI6 632 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 OPHN1O60890 802 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 GUCY1B3Q02153 619 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 CCDC51Q96ER9 411 aa12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 PPP1R1BQ9UD71 204 aaPredicted RBP12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 UTP14AQ9BVJ6 771 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-217ENST00000512946 RPL13P26373 211 aaKnown RBP12.58□□□□□ -0.39
LIMCH1-217ENST00000512946 LMOD1P29536 600 aaPredicted RBP12.58□□□□□ -0.39
LIMCH1-217ENST00000512946 CCDC92Q53HC0 331 aaPredicted RBP12.58□□□□□ -0.39
LIMCH1-217ENST00000512946 UBL4BQ8N7F7 174 aa12.58□□□□□ -0.39
LIMCH1-217ENST00000512946 RAB17Q9H0T7 212 aa12.58□□□□□ -0.39
LIMCH1-217ENST00000512946 NUCKS1Q9H1E3 243 aaKnown RBP12.58□□□□□ -0.39
LIMCH1-217ENST00000512946 CNNM2Q9H8M5 875 aa12.58□□□□□ -0.39
LIMCH1-217ENST00000512946 CALML3P27482 149 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 FCHSD1Q86WN1 690 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 TUBB6Q9BUF5 446 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 ACTR5Q9H9F9 607 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 TMPOP42166 694 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 UBXN1Q04323 297 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 KARSQ15046 597 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 SYCE1Q8N0S2 351 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 ARHGAP45Q92619 1136 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 NOX5Q96PH1 765 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 CAVIN4Q5BKX8 364 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 PSMD1Q99460 953 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 CARD6Q9BX69 1037 aa12.58□□□□□ -0.4
LIMCH1-217ENST00000512946 E7EVH7 732 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 GIPC1O14908 333 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 TMEM67Q5HYA8 995 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 HS2ST1Q7LGA3 356 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 KRT23Q9C075 422 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 SCOCQ9UIL1 159 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 HMGB3O15347 200 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 DEUP1Q05D60 604 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 CFAP221Q4G0U5 840 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 CCDC25Q86WR0 208 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 SEPT8Q92599 483 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 TRIM75PA6NK02 468 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 CREB3O43889 395 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 POLR3DP05423 398 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 ELF2Q15723 593 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 GFM2Q969S9 779 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 NAP1L4Q99733 375 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 CNPY2Q9Y2B0 182 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 ERCC6Q03468 1493 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 EFCAB8A8MWE9 144 aa12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 MRPS9P82933 396 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-217ENST00000512946 LDHCP07864 332 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 ATP2A3Q93084 1043 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 XAB2Q9HCS7 855 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 JRKLQ9Y4A0 524 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 IL16Q14005 1332 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 ANKRD50Q9ULJ7 1429 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 SKIP12755 728 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 PDE4BQ07343 736 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 METTL24Q5JXM2 366 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 SULT6B1Q6IMI4 303 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 PPP1R21Q6ZMI0 780 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 IQUBQ8NA54 791 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 FBXO41Q8TF61 875 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 SMIM23A6NLE4 172 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 SPECC1L-ADORA2AF8WAN1 911 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 ANKRD20A4Q4UJ75 823 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 ANKRD20A8PQ5CZ79 823 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 ANKRD20A2Q5SQ80 823 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 ANKRD20A1Q5TYW2 823 aa12.56□□□□□ -0.4
LIMCH1-217ENST00000512946 NLRP7Q8WX94 980 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms