RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 TMX4Q9H1E5 349 aaPredicted RBP18.21■□□□□ 0.51
SCLT1-209ENST00000511426 PIH1D3Q9NQM4 214 aaKnown RBP18.21■□□□□ 0.51
SCLT1-209ENST00000511426 ATP6V0A2Q9Y487 856 aa18.21■□□□□ 0.51
SCLT1-209ENST00000511426 PPEF1O14829 653 aaPredicted RBP18.2■□□□□ 0.5
SCLT1-209ENST00000511426 GYG1P46976 350 aa18.2■□□□□ 0.5
SCLT1-209ENST00000511426 ZNF804AQ7Z570 1209 aa18.2■□□□□ 0.5
SCLT1-209ENST00000511426 OSBP2Q969R2 916 aa18.2■□□□□ 0.5
SCLT1-209ENST00000511426 CTNNA3Q9UI47 895 aa18.2■□□□□ 0.5
SCLT1-209ENST00000511426 GGA1Q9UJY5 639 aa18.2■□□□□ 0.5
SCLT1-209ENST00000511426 PDE6AP16499 860 aa18.19■□□□□ 0.5
SCLT1-209ENST00000511426 PRPF40BQ6NWY9 871 aaKnown RBP18.19■□□□□ 0.5
SCLT1-209ENST00000511426 SALL1Q9NSC2 1324 aa18.19■□□□□ 0.5
SCLT1-209ENST00000511426 TCRBV5S4A2TA0A5A2 114 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 SLC27A2O14975 620 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 NEK4P51957 841 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 SEC62Q99442 399 aaKnown RBP18.18■□□□□ 0.5
SCLT1-209ENST00000511426 RPAP1Q9BWH6 1393 aaPredicted RBP18.18■□□□□ 0.5
SCLT1-209ENST00000511426 ZMYM6O95789 1325 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 LTBP1Q14766 1721 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 H0YIN7 160 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 HSPD1P10809 573 aaKnown RBP18.18■□□□□ 0.5
SCLT1-209ENST00000511426 GNAT2P19087 354 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 MSL1Q68DK7 614 aa18.18■□□□□ 0.5
SCLT1-209ENST00000511426 ZNF532Q9HCE3 1301 aa18.17■□□□□ 0.5
SCLT1-209ENST00000511426 FRAT2O75474 233 aaPredicted RBP18.17■□□□□ 0.5
SCLT1-209ENST00000511426 GPSM2P81274 684 aa18.17■□□□□ 0.5
SCLT1-209ENST00000511426 ZSWIM6Q9HCJ5 1215 aa18.17■□□□□ 0.5
SCLT1-209ENST00000511426 LRP2BPQ9P2M1 347 aa18.17■□□□□ 0.5
SCLT1-209ENST00000511426 NSFL1CQ9UNZ2 370 aaKnown RBP18.17■□□□□ 0.5
SCLT1-209ENST00000511426 C10orf71Q711Q0 1435 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 M0R2C6 588 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 GPAA1O43292 621 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 HMGB1P09429 215 aaKnown RBP18.16■□□□□ 0.5
SCLT1-209ENST00000511426 SLC4A3P48751 1232 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 GRIPAP1Q4V328 841 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 SPTY2D1Q68D10 685 aaPredicted RBP18.16■□□□□ 0.5
SCLT1-209ENST00000511426 RASEFQ8IZ41 740 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 TDRD7Q8NHU6 1098 aaKnown RBP18.16■□□□□ 0.5
SCLT1-209ENST00000511426 WDR66Q8TBY9 1149 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 CNKSR1Q969H4 720 aa18.16■□□□□ 0.5
SCLT1-209ENST00000511426 COL11A2P13942 1736 aaPredicted RBP18.16■□□□□ 0.5
SCLT1-209ENST00000511426 COL1A1P02452 1464 aaPredicted RBP18.16■□□□□ 0.5
SCLT1-209ENST00000511426 UFL1O94874 794 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 VPS53Q5VIR6 699 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 CC2D2BQ6DHV5 1058 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 CCDC129Q6ZRS4 1044 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 PUS7LQ9H0K6 701 aaKnown RBP18.15■□□□□ 0.5
SCLT1-209ENST00000511426 ALDH8A1Q9H2A2 487 aaPredicted RBP18.15■□□□□ 0.5
SCLT1-209ENST00000511426 WWC3Q9ULE0 1092 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 CYP46A1Q9Y6A2 500 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 C2CD5Q86YS7 1000 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 MAGEB6Q8N7X4 407 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 TBC1D16Q8TBP0 767 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 AIDAQ96BJ3 306 aa18.15■□□□□ 0.5
SCLT1-209ENST00000511426 CD2BP2O95400 341 aaKnown RBP18.14■□□□□ 0.49
SCLT1-209ENST00000511426 CHGBP05060 677 aa18.14■□□□□ 0.49
SCLT1-209ENST00000511426 IL1R1P14778 569 aa18.14■□□□□ 0.49
SCLT1-209ENST00000511426 ANKRD1Q15327 319 aa18.14■□□□□ 0.49
SCLT1-209ENST00000511426 ALX1Q15699 326 aa18.14■□□□□ 0.49
SCLT1-209ENST00000511426 RUFY3Q7L099 469 aa18.14■□□□□ 0.49
SCLT1-209ENST00000511426 TTC14Q96N46 770 aa18.14■□□□□ 0.49
SCLT1-209ENST00000511426 CIZ1Q9ULV3 898 aaPredicted RBP18.14■□□□□ 0.49
SCLT1-209ENST00000511426 MAST2Q6P0Q8 1798 aa18.14■□□□□ 0.49
SCLT1-209ENST00000511426 HSP90AA1P07900 732 aaKnown RBP18.13■□□□□ 0.49
SCLT1-209ENST00000511426 CASTP20810 708 aaKnown RBP18.13■□□□□ 0.49
SCLT1-209ENST00000511426 KLRK1P26718 216 aa18.13■□□□□ 0.49
SCLT1-209ENST00000511426 JAKMIP1Q96N16 626 aaKnown RBP18.13■□□□□ 0.49
SCLT1-209ENST00000511426 MYH13Q9UKX3 1938 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 CYP21A2P08686 494 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 IMMTQ16891 758 aaKnown RBP18.12■□□□□ 0.49
SCLT1-209ENST00000511426 BLOC1S2Q6QNY1 142 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 ILDR1Q86SU0 546 aaPredicted RBP18.12■□□□□ 0.49
SCLT1-209ENST00000511426 CERS3Q8IU89 383 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 MPNDQ8N594 471 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 EYA3Q99504 573 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 ABCF2Q9UG63 623 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 TXNRD3Q86VQ6 643 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 TBC1D22AQ8WUA7 517 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 STRBPQ96SI9 672 aaKnown RBP18.12■□□□□ 0.49
SCLT1-209ENST00000511426 UPF3BQ9BZI7 483 aaKnown RBP18.12■□□□□ 0.49
SCLT1-209ENST00000511426 COA1Q9GZY4 146 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 CWC22Q9HCG8 908 aaKnown RBP18.12■□□□□ 0.49
SCLT1-209ENST00000511426 RAI14Q9P0K7 980 aa18.12■□□□□ 0.49
SCLT1-209ENST00000511426 WTIPA6NIX2 430 aaPredicted RBP18.11■□□□□ 0.49
SCLT1-209ENST00000511426 INTS4Q96HW7 963 aaKnown RBP18.11■□□□□ 0.49
SCLT1-209ENST00000511426 CD209Q9NNX6 404 aa18.11■□□□□ 0.49
SCLT1-209ENST00000511426 PATL2C9JE40 543 aaKnown RBP18.1■□□□□ 0.49
SCLT1-209ENST00000511426 CUL4AQ13619 759 aa18.1■□□□□ 0.49
SCLT1-209ENST00000511426 SLFNL1Q499Z3 407 aa18.1■□□□□ 0.49
SCLT1-209ENST00000511426 NAA16Q6N069 864 aaPredicted RBP18.1■□□□□ 0.49
SCLT1-209ENST00000511426 DPP8Q6V1X1 898 aaPredicted RBP18.1■□□□□ 0.49
SCLT1-209ENST00000511426 ZNF622Q969S3 477 aaKnown RBP eCLIP18.1■□□□□ 0.491e-6■□□□□ 9.1
SCLT1-209ENST00000511426 ZSCAN31Q96LW9 406 aaPredicted RBP18.1■□□□□ 0.49
SCLT1-209ENST00000511426 NEK1Q96PY6 1258 aa18.1■□□□□ 0.49
SCLT1-209ENST00000511426 NACAP1Q9BZK3 213 aa18.1■□□□□ 0.49
SCLT1-209ENST00000511426 POLLQ9UGP5 575 aa18.1■□□□□ 0.49
SCLT1-209ENST00000511426 IQSEC3Q9UPP2 1182 aaPredicted RBP18.1■□□□□ 0.49
SCLT1-209ENST00000511426 KIAA1551Q9HCM1 1747 aa18.1■□□□□ 0.49
SCLT1-209ENST00000511426 C6orf229H3BNL8 230 aa18.09■□□□□ 0.49
SCLT1-209ENST00000511426 CYP7A1P22680 504 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms