RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 SPATA5Q8NB90 893 aa18.1■□□□□ 0.49
RNF4-213ENST00000509388 TBC1D22AQ8WUA7 517 aa18.1■□□□□ 0.49
RNF4-213ENST00000509388 GTF3C3Q9Y5Q9 886 aa18.1■□□□□ 0.49
RNF4-213ENST00000509388 A0A1B0GUL6 1792 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 FAM205AQ6ZU69 1335 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 ZNF541Q9H0D2 1346 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 ATP5JP18859 108 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 MFSD14BQ5SR56 506 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 ZGPATQ8N5A5 531 aaKnown RBP18.09■□□□□ 0.49
RNF4-213ENST00000509388 OTUD7AQ8TE49 926 aaPredicted RBP18.09■□□□□ 0.49
RNF4-213ENST00000509388 BOLA2Q9H3K6 86 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 SNRKQ9NRH2 765 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 HMG20BQ9P0W2 317 aa18.09■□□□□ 0.49
RNF4-213ENST00000509388 GOLGB1Q14789 3259 aaKnown RBP18.08■□□□□ 0.49
RNF4-213ENST00000509388 MYO3BQ8WXR4 1341 aa18.08■□□□□ 0.49
RNF4-213ENST00000509388 DDNO94850 711 aaPredicted RBP18.08■□□□□ 0.48
RNF4-213ENST00000509388 VIL1P09327 827 aaKnown RBP18.08■□□□□ 0.48
RNF4-213ENST00000509388 MCAMP43121 646 aa18.08■□□□□ 0.48
RNF4-213ENST00000509388 DACT2Q5SW24 774 aa18.08■□□□□ 0.48
RNF4-213ENST00000509388 RSBN1LQ6PCB5 846 aaPredicted RBP18.08■□□□□ 0.48
RNF4-213ENST00000509388 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.08■□□□□ 0.48
RNF4-213ENST00000509388 COL4A5P29400 1685 aa18.08■□□□□ 0.48
RNF4-213ENST00000509388 GLTPD2A6NH11 291 aa18.07■□□□□ 0.48
RNF4-213ENST00000509388 ZBTB22O15209 634 aa18.07■□□□□ 0.48
RNF4-213ENST00000509388 GLRX3O76003 335 aaKnown RBP18.07■□□□□ 0.48
RNF4-213ENST00000509388 PDE1AP54750 535 aa18.07■□□□□ 0.48
RNF4-213ENST00000509388 FKBP1AP62942 108 aaKnown RBP18.07■□□□□ 0.48
RNF4-213ENST00000509388 SCARF1Q14162 830 aa18.07■□□□□ 0.48
RNF4-213ENST00000509388 TSHZ3Q63HK5 1081 aa18.07■□□□□ 0.48
RNF4-213ENST00000509388 DNAJC2Q99543 621 aaKnown RBP18.07■□□□□ 0.48
RNF4-213ENST00000509388 ABCF2Q9UG63 623 aa18.07■□□□□ 0.48
RNF4-213ENST00000509388 ZBTB12Q9Y330 459 aaPredicted RBP18.07■□□□□ 0.48
RNF4-213ENST00000509388 PDS5AQ29RF7 1337 aaKnown RBP18.06■□□□□ 0.48
RNF4-213ENST00000509388 RPS12P25398 132 aaKnown RBP18.06■□□□□ 0.48
RNF4-213ENST00000509388 LMOD1P29536 600 aaPredicted RBP18.06■□□□□ 0.48
RNF4-213ENST00000509388 ZAP70P43403 619 aa18.06■□□□□ 0.48
RNF4-213ENST00000509388 SPTY2D1Q68D10 685 aaPredicted RBP18.06■□□□□ 0.48
RNF4-213ENST00000509388 PI16Q6UXB8 463 aa18.06■□□□□ 0.48
RNF4-213ENST00000509388 AGBL3Q8NEM8 1001 aa18.06■□□□□ 0.48
RNF4-213ENST00000509388 MXD3Q9BW11 206 aa18.06■□□□□ 0.48
RNF4-213ENST00000509388 STAP2Q9UGK3 403 aa18.06■□□□□ 0.48
RNF4-213ENST00000509388 F8W031 263 aaPredicted RBP18.05■□□□□ 0.48
RNF4-213ENST00000509388 GMPSP49915 693 aaPredicted RBP18.05■□□□□ 0.48
RNF4-213ENST00000509388 TTF1Q15361 905 aaPredicted RBP18.05■□□□□ 0.48
RNF4-213ENST00000509388 PLEKHM2Q8IWE5 1019 aa18.05■□□□□ 0.48
RNF4-213ENST00000509388 OGFOD1Q8N543 542 aa18.05■□□□□ 0.48
RNF4-213ENST00000509388 LRP2BPQ9P2M1 347 aa18.05■□□□□ 0.48
RNF4-213ENST00000509388 HDAC9Q9UKV0 1011 aa18.05■□□□□ 0.48
RNF4-213ENST00000509388 SBF1O95248 1867 aa18.04■□□□□ 0.48
RNF4-213ENST00000509388 GOLIM4O00461 696 aa18.04■□□□□ 0.48
RNF4-213ENST00000509388 LDHBP07195 334 aaKnown RBP18.04■□□□□ 0.48
RNF4-213ENST00000509388 ERICH6Q7L0X2 663 aa18.04■□□□□ 0.48
RNF4-213ENST00000509388 KIAA0825Q8IV33 1275 aa18.04■□□□□ 0.48
RNF4-213ENST00000509388 HAUS7Q99871 368 aa18.04■□□□□ 0.48
RNF4-213ENST00000509388 RAI14Q9P0K7 980 aa18.04■□□□□ 0.48
RNF4-213ENST00000509388 ARAP2Q8WZ64 1704 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 AOX1Q06278 1338 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 SALL3Q9BXA9 1300 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 SALL1Q9NSC2 1324 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 H7C1D1 291 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 CYP2E1P05181 493 aaPredicted RBP18.03■□□□□ 0.48
RNF4-213ENST00000509388 USP17L8P0C7I0 530 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 PDE4AP27815 886 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 TBC1D9Q6ZT07 1266 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 DPF2Q92785 391 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 PAG1Q9NWQ8 432 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 TTF2Q9UNY4 1162 aaKnown RBP18.03■□□□□ 0.48
RNF4-213ENST00000509388 SUGT1Q9Y2Z0 365 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 NDUFB9Q9Y6M9 179 aa18.03■□□□□ 0.48
RNF4-213ENST00000509388 RGS3P49796 1198 aa18.02■□□□□ 0.48
RNF4-213ENST00000509388 CCDC88AQ3V6T2 1871 aa18.02■□□□□ 0.48
RNF4-213ENST00000509388 DZIP1Q86YF9 867 aaKnown RBP18.02■□□□□ 0.48
RNF4-213ENST00000509388 CERS5Q8N5B7 392 aa18.02■□□□□ 0.48
RNF4-213ENST00000509388 PI4K2BQ8TCG2 481 aa18.02■□□□□ 0.48
RNF4-213ENST00000509388 ZNF526Q8TF50 670 aaPredicted RBP18.02■□□□□ 0.48
RNF4-213ENST00000509388 OSBPL3Q9H4L5 887 aa18.02■□□□□ 0.48
RNF4-213ENST00000509388 CNOT7Q9UIV1 285 aaKnown RBP18.02■□□□□ 0.48
RNF4-213ENST00000509388 MAST3O60307 1309 aa18.01■□□□□ 0.47
RNF4-213ENST00000509388 IQCA1LA6NCM1 817 aa18.01■□□□□ 0.47
RNF4-213ENST00000509388 TRIM6-TRIM34B2RNG4 842 aa18.01■□□□□ 0.47
RNF4-213ENST00000509388 IDH1O75874 414 aaKnown RBP18.01■□□□□ 0.47
RNF4-213ENST00000509388 MAP4K4O95819 1239 aaPredicted RBP18.01■□□□□ 0.47
RNF4-213ENST00000509388 YY1P25490 414 aa18.01■□□□□ 0.47
RNF4-213ENST00000509388 MMP14P50281 582 aa18.01■□□□□ 0.47
RNF4-213ENST00000509388 MICALL2Q8IY33 904 aa18.01■□□□□ 0.47
RNF4-213ENST00000509388 COL1A1P02452 1464 aaPredicted RBP18.01■□□□□ 0.47
RNF4-213ENST00000509388 DICER1Q9UPY3 1922 aaKnown RBP18■□□□□ 0.47
RNF4-213ENST00000509388 RBM5P52756 815 aaKnown RBP eCLIP18■□□□□ 0.47
RNF4-213ENST00000509388 MAP3K12Q12852 859 aa18■□□□□ 0.47
RNF4-213ENST00000509388 SLF2Q8IX21 1173 aa18■□□□□ 0.47
RNF4-213ENST00000509388 L3MBTL3Q96JM7 780 aaPredicted RBP18■□□□□ 0.47
RNF4-213ENST00000509388 GMLQ99445 158 aa18■□□□□ 0.47
RNF4-213ENST00000509388 DDX24Q9GZR7 859 aaKnown RBP eCLIP18■□□□□ 0.47
RNF4-213ENST00000509388 ANTXR1Q9H6X2 564 aa18■□□□□ 0.47
RNF4-213ENST00000509388 GPRC5DQ9NZD1 345 aa18■□□□□ 0.47
RNF4-213ENST00000509388 HACL1Q9UJ83 578 aa18■□□□□ 0.47
RNF4-213ENST00000509388 TIAM2Q8IVF5 1701 aa17.99■□□□□ 0.47
RNF4-213ENST00000509388 IGSF3O75054 1194 aa17.99■□□□□ 0.47
RNF4-213ENST00000509388 PRDX5P30044 214 aa17.99■□□□□ 0.47
RNF4-213ENST00000509388 SCNN1DP51172 638 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms