RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 EIF4EBP3O60516 100 aaPredicted RBP6.3□□□□□ -1.4
NUP54-208ENST00000508604 IKBKEQ14164 716 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 NOM1Q5C9Z4 860 aaKnown RBP6.3□□□□□ -1.4
NUP54-208ENST00000508604 ATCAYQ86WG3 371 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 BSNDQ8WZ55 320 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 CPSF6Q16630 551 aaKnown RBP eCLIP6.3□□□□□ -1.4
NUP54-208ENST00000508604 ALKBH2Q6NS38 261 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 TMEM102Q8N9M5 508 aaPredicted RBP6.3□□□□□ -1.4
NUP54-208ENST00000508604 PBXIP1Q96AQ6 731 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 YIPF2Q9BWQ6 316 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 USP26Q9BXU7 913 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 KRTAP17-1Q9BYP8 105 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 SEPT3Q9UH03 358 aa6.3□□□□□ -1.4
NUP54-208ENST00000508604 NFKBIEO00221 500 aa6.29□□□□□ -1.4
NUP54-208ENST00000508604 MZF1P28698 734 aaPredicted RBP6.29□□□□□ -1.4
NUP54-208ENST00000508604 USP11P51784 963 aa6.29□□□□□ -1.4
NUP54-208ENST00000508604 SRPK2P78362 688 aaKnown RBP6.29□□□□□ -1.4
NUP54-208ENST00000508604 AAMPQ13685 434 aa6.29□□□□□ -1.4
NUP54-208ENST00000508604 FBXL6Q8N531 539 aa6.29□□□□□ -1.4
NUP54-208ENST00000508604 HELQQ8TDG4 1101 aa6.29□□□□□ -1.4
NUP54-208ENST00000508604 CCDC97Q96F63 343 aaPredicted RBP6.29□□□□□ -1.4
NUP54-208ENST00000508604 OSMRQ99650 979 aa6.29□□□□□ -1.4
NUP54-208ENST00000508604 SOX13Q9UN79 622 aa6.29□□□□□ -1.4
NUP54-208ENST00000508604 ADAMTS4O75173 837 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 PDGFAP04085 211 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 EDN3P14138 238 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 ACPPP15309 386 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 NFKBIBQ15653 356 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 SGO2Q562F6 1265 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 PAOXQ6QHF9 649 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 METTL22Q9BUU2 404 aaPredicted RBP6.28□□□□□ -1.4
NUP54-208ENST00000508604 KRTAP9-9Q9BYP9 154 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 KRTAP9-4Q9BYQ2 154 aa6.28□□□□□ -1.4
NUP54-208ENST00000508604 FAM95CA0A1B0GW59 222 aa6.27□□□□□ -1.41
NUP54-208ENST00000508604 TRPA1O75762 1119 aa6.27□□□□□ -1.41
NUP54-208ENST00000508604 SMG8Q8ND04 991 aaKnown RBP6.27□□□□□ -1.41
NUP54-208ENST00000508604 SOX1O00570 391 aaPredicted RBP6.26□□□□□ -1.41
NUP54-208ENST00000508604 PHACTR2O75167 634 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 EHHADHQ08426 723 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 EXOSC6Q5RKV6 272 aaKnown RBP6.26□□□□□ -1.41
NUP54-208ENST00000508604 ASAP3Q8TDY4 903 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 NXPE3Q969Y0 559 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 GGNBP2Q9H3C7 697 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 SUGCTQ9HAC7 445 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 FOSL1P15407 271 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 FBXL18Q96ME1 805 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 HHIPQ96QV1 700 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 TMPRSS13Q9BYE2 586 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 SOX17Q9H6I2 414 aaPredicted RBP6.26□□□□□ -1.41
NUP54-208ENST00000508604 ADGRE2Q9UHX3 823 aa6.26□□□□□ -1.41
NUP54-208ENST00000508604 A6NHS1 94 aa6.25□□□□□ -1.41
NUP54-208ENST00000508604 F13BP05160 661 aa6.25□□□□□ -1.41
NUP54-208ENST00000508604 HOXA10P31260 410 aaPredicted RBP6.25□□□□□ -1.41
NUP54-208ENST00000508604 USP5P45974 858 aa6.25□□□□□ -1.41
NUP54-208ENST00000508604 EIF1AXP47813 144 aaKnown RBP6.25□□□□□ -1.41
NUP54-208ENST00000508604 SNX29Q8TEQ0 813 aa6.25□□□□□ -1.41
NUP54-208ENST00000508604 ZKSCAN3Q9BRR0 538 aa6.25□□□□□ -1.41
NUP54-208ENST00000508604 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.25□□□□□ -1.41
NUP54-208ENST00000508604 LOC100289279A0A1B0GTE1 492 aa6.24□□□□□ -1.41
NUP54-208ENST00000508604 CYP26A1O43174 497 aa6.24□□□□□ -1.41
NUP54-208ENST00000508604 GSTM4Q03013 218 aa6.24□□□□□ -1.41
NUP54-208ENST00000508604 HP1BP3Q5SSJ5 553 aaPredicted RBP6.24□□□□□ -1.41
NUP54-208ENST00000508604 TP53INP2Q8IXH6 220 aa6.24□□□□□ -1.41
NUP54-208ENST00000508604 CHRDQ9H2X0 955 aa6.24□□□□□ -1.41
NUP54-208ENST00000508604 SERPINA10Q9UK55 444 aa6.24□□□□□ -1.41
NUP54-208ENST00000508604 MTMR7Q9Y216 660 aa6.24□□□□□ -1.41
NUP54-208ENST00000508604 EREGO14944 169 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 TIAF1O95411 115 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 MPSTP25325 297 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 HGSNATQ68CP4 663 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 VN1R5Q7Z5H4 357 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 VSIG10LQ86VR7 867 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 ABI1Q8IZP0 508 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 TBC1D32Q96NH3 1257 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 ZFYVE1Q9HBF4 777 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 POLIQ9UNA4 740 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 TNFRSF21O75509 655 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 GTF3C2Q8WUA4 911 aaPredicted RBP6.23□□□□□ -1.41
NUP54-208ENST00000508604 FBLIM1Q8WUP2 373 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 CCDC39Q9UFE4 941 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 AMOTL2Q9Y2J4 779 aa6.23□□□□□ -1.41
NUP54-208ENST00000508604 FAM13AO94988 1023 aa6.22□□□□□ -1.41
NUP54-208ENST00000508604 MSMPQ1L6U9 139 aa6.22□□□□□ -1.41
NUP54-208ENST00000508604 DUSP27Q5VZP5 1158 aa6.22□□□□□ -1.41
NUP54-208ENST00000508604 ASIC4Q96FT7 647 aa6.22□□□□□ -1.41
NUP54-208ENST00000508604 BHLHE41Q9C0J9 482 aaPredicted RBP6.22□□□□□ -1.41
NUP54-208ENST00000508604 BSDC1Q9NW68 430 aaPredicted RBP6.22□□□□□ -1.41
NUP54-208ENST00000508604 SLAIN2Q9P270 581 aa6.22□□□□□ -1.41
NUP54-208ENST00000508604 ESRRAP11474 423 aaPredicted RBP6.21□□□□□ -1.42
NUP54-208ENST00000508604 DRD2P14416 443 aa6.21□□□□□ -1.42
NUP54-208ENST00000508604 SOX4Q06945 474 aaPredicted RBP6.21□□□□□ -1.42
NUP54-208ENST00000508604 FZD5Q13467 585 aa6.21□□□□□ -1.42
NUP54-208ENST00000508604 AGBL5Q8NDL9 886 aa6.21□□□□□ -1.42
NUP54-208ENST00000508604 PRNPP04156 253 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 CYP27A1Q02318 531 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 MAP7Q14244 749 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 CDPF1Q6NVV7 123 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 DDX54Q8TDD1 881 aaKnown RBP6.2□□□□□ -1.42
NUP54-208ENST00000508604 KRTAP4-8A0A0G2JLE6 195 aa6.2□□□□□ -1.42
NUP54-208ENST00000508604 CYP11A1P05108 521 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms