RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SCNN1DP51172 638 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 GTF2IP78347 998 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 USP50Q70EL3 339 aaPredicted RBP11.24□□□□□ -0.61
NUP54-207ENST00000508583 CLASRPQ8N2M8 674 aaKnown RBP11.24□□□□□ -0.61
NUP54-207ENST00000508583 ZGPATQ8N5A5 531 aaKnown RBP11.24□□□□□ -0.61
NUP54-207ENST00000508583 TDRD7Q8NHU6 1098 aaKnown RBP11.24□□□□□ -0.61
NUP54-207ENST00000508583 NEUROD6Q96NK8 337 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 TAF1DQ9H5J8 278 aaPredicted RBP11.24□□□□□ -0.61
NUP54-207ENST00000508583 ADARB2Q9NS39 739 aaKnown RBP11.24□□□□□ -0.61
NUP54-207ENST00000508583 ZBTB47Q9UFB7 747 aaPredicted RBP11.24□□□□□ -0.61
NUP54-207ENST00000508583 EXOC6BQ9Y2D4 811 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 SCN9AQ15858 1988 aa11.24□□□□□ -0.61
NUP54-207ENST00000508583 POTECB2RU33 542 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 USP17L8P0C7I0 530 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 CCDC158Q5M9N0 1113 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 DACT2Q5SW24 774 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 LDHDQ86WU2 507 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 MICALL2Q8IY33 904 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 SMC1BQ8NDV3 1235 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 RBM46Q8TBY0 533 aaKnown RBP11.23□□□□□ -0.61
NUP54-207ENST00000508583 WDR66Q8TBY9 1149 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 CNOT7Q9UIV1 285 aaKnown RBP11.23□□□□□ -0.61
NUP54-207ENST00000508583 DENND2AQ9ULE3 1009 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 SUGT1Q9Y2Z0 365 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 MAST3O60307 1309 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 FAM205AQ6ZU69 1335 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 MYH13Q9UKX3 1938 aa11.23□□□□□ -0.61
NUP54-207ENST00000508583 UQCRFS1P1P0C7P4 283 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 BCAMP50895 628 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 FSTL1Q12841 308 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 PDS5AQ29RF7 1337 aaKnown RBP11.22□□□□□ -0.61
NUP54-207ENST00000508583 TNNI3KQ59H18 835 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 MFSD14BQ5SR56 506 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 SIRT2Q8IXJ6 389 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 RHPN1Q8TCX5 695 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 XAGE2Q96GT9 111 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 LRRCC1Q9C099 1032 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 KCNQ5Q9NR82 932 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 ZBTB12Q9Y330 459 aaPredicted RBP11.22□□□□□ -0.61
NUP54-207ENST00000508583 FPGT-TNNI3KV9GXZ4 949 aa11.22□□□□□ -0.61
NUP54-207ENST00000508583 IGSF3O75054 1194 aa11.21□□□□□ -0.61
NUP54-207ENST00000508583 IFIT2P09913 472 aaKnown RBP11.21□□□□□ -0.61
NUP54-207ENST00000508583 ZNF280AP59817 542 aaPredicted RBP11.21□□□□□ -0.61
NUP54-207ENST00000508583 TIMM10P62072 90 aa11.21□□□□□ -0.61
NUP54-207ENST00000508583 HDAC1Q13547 482 aaPredicted RBP11.21□□□□□ -0.61
NUP54-207ENST00000508583 EAPPQ56P03 285 aaPredicted RBP11.21□□□□□ -0.61
NUP54-207ENST00000508583 CCDC102BQ68D86 513 aa11.21□□□□□ -0.61
NUP54-207ENST00000508583 ZC3H15Q8WU90 426 aaKnown RBP11.21□□□□□ -0.61
NUP54-207ENST00000508583 RWDD1Q9H446 243 aaPredicted RBP11.21□□□□□ -0.61
NUP54-207ENST00000508583 DCTPP1Q9H773 170 aa11.21□□□□□ -0.61
NUP54-207ENST00000508583 NPM3O75607 178 aaKnown RBP11.2□□□□□ -0.62
NUP54-207ENST00000508583 EPS15P42566 896 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 CHAF1AQ13111 956 aaPredicted RBP11.2□□□□□ -0.62
NUP54-207ENST00000508583 KIF4BQ2VIQ3 1234 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 TTC39AQ5SRH9 613 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 SPTY2D1Q68D10 685 aaPredicted RBP11.2□□□□□ -0.62
NUP54-207ENST00000508583 AACSQ86V21 672 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 GCC1Q96CN9 775 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 GPATCH3Q96I76 525 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 GMLQ99445 158 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 CLEC11AQ9Y240 323 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 PCDHB15Q9Y5E8 787 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 ADAMTSL1Q8N6G6 1762 aa11.2□□□□□ -0.62
NUP54-207ENST00000508583 SALL1Q9NSC2 1324 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 APBB1O00213 710 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 MYO1BO43795 1136 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 NEFLP07196 543 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 ARID4AP29374 1257 aaPredicted RBP11.19□□□□□ -0.62
NUP54-207ENST00000508583 ADORA1P30542 326 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 PHKA1P46020 1223 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 CHADLQ6NUI6 762 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 KIAA0825Q8IV33 1275 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 EXOC6Q8TAG9 804 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 ZNF512BQ96KM6 892 aaPredicted RBP11.19□□□□□ -0.62
NUP54-207ENST00000508583 MYOZ2Q9NPC6 264 aa11.19□□□□□ -0.62
NUP54-207ENST00000508583 SHTN1A0MZ66 631 aa11.18□□□□□ -0.62
NUP54-207ENST00000508583 POTEIP0CG38 1075 aa11.18□□□□□ -0.62
NUP54-207ENST00000508583 POTEJP0CG39 1038 aa11.18□□□□□ -0.62
NUP54-207ENST00000508583 HDLBPQ00341 1268 aaKnown RBP11.18□□□□□ -0.62
NUP54-207ENST00000508583 SLF2Q8IX21 1173 aa11.18□□□□□ -0.62
NUP54-207ENST00000508583 SERPINA10Q9UK55 444 aa11.18□□□□□ -0.62
NUP54-207ENST00000508583 TTF2Q9UNY4 1162 aaKnown RBP11.18□□□□□ -0.62
NUP54-207ENST00000508583 IQSEC3Q9UPP2 1182 aaPredicted RBP11.18□□□□□ -0.62
NUP54-207ENST00000508583 LDHBP07195 334 aaKnown RBP11.17□□□□□ -0.62
NUP54-207ENST00000508583 C1QTNF8P60827 252 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 RASGRF1Q13972 1273 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 DLGAP5Q15398 846 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 TMED8Q6PL24 325 aaPredicted RBP11.17□□□□□ -0.62
NUP54-207ENST00000508583 SPATA5Q8NB90 893 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 MTMR14Q8NCE2 650 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 TEKT1Q969V4 418 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 DCPSQ96C86 337 aaKnown RBP11.17□□□□□ -0.62
NUP54-207ENST00000508583 EAF2Q96CJ1 260 aaPredicted RBP11.17□□□□□ -0.62
NUP54-207ENST00000508583 DBNDD2Q9BQY9 259 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 MXD3Q9BW11 206 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 MRIQ9BWK5 157 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 IL1RAPL2Q9NP60 686 aa11.17□□□□□ -0.62
NUP54-207ENST00000508583 DBNLQ9UJU6 430 aaKnown RBP11.17□□□□□ -0.62
NUP54-207ENST00000508583 PITPNM2Q9BZ72 1349 aa11.16□□□□□ -0.62
NUP54-207ENST00000508583 RBM5P52756 815 aaKnown RBP eCLIP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms