RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 MOB2Q70IA6 237 aa16.43■□□□□ 0.22
HMGCS1-205ENST00000508319 ABHD8Q96I13 439 aa16.43■□□□□ 0.22
HMGCS1-205ENST00000508319 BICC1Q9H694 974 aaKnown RBP16.43■□□□□ 0.22
HMGCS1-205ENST00000508319 HDAC9Q9UKV0 1011 aa16.43■□□□□ 0.22
HMGCS1-205ENST00000508319 RABL6Q3YEC7 729 aaPredicted RBP16.42■□□□□ 0.22
HMGCS1-205ENST00000508319 ANKRD44Q8N8A2 993 aa16.42■□□□□ 0.22
HMGCS1-205ENST00000508319 PUS3Q9BZE2 481 aaKnown RBP16.42■□□□□ 0.22
HMGCS1-205ENST00000508319 COL1A1P02452 1464 aaPredicted RBP16.42■□□□□ 0.22
HMGCS1-205ENST00000508319 PLIN1O60240 522 aa16.41■□□□□ 0.22
HMGCS1-205ENST00000508319 APOBEC3FQ8IUX4 373 aaKnown RBP16.41■□□□□ 0.22
HMGCS1-205ENST00000508319 CDCA7LQ96GN5 454 aa16.41■□□□□ 0.22
HMGCS1-205ENST00000508319 SAGE1Q9NXZ1 904 aa16.41■□□□□ 0.22
HMGCS1-205ENST00000508319 JAG2Q9Y219 1238 aa16.41■□□□□ 0.22
HMGCS1-205ENST00000508319 FKBP1AP62942 108 aaKnown RBP16.4■□□□□ 0.22
HMGCS1-205ENST00000508319 UBE4AQ14139 1066 aa16.4■□□□□ 0.22
HMGCS1-205ENST00000508319 MTMR14Q8NCE2 650 aa16.4■□□□□ 0.22
HMGCS1-205ENST00000508319 CSRNP1Q96S65 589 aa16.4■□□□□ 0.22
HMGCS1-205ENST00000508319 RIPOR2Q9Y4F9 1068 aa16.4■□□□□ 0.22
HMGCS1-205ENST00000508319 UBE2Q2LH0YL09 131 aa16.39■□□□□ 0.21
HMGCS1-205ENST00000508319 TRMT2AQ8IZ69 625 aaKnown RBP16.39■□□□□ 0.21
HMGCS1-205ENST00000508319 PCDHAC2Q9Y5I4 1007 aa16.39■□□□□ 0.21
HMGCS1-205ENST00000508319 SSC5DA1L4H1 1573 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 SPDYE2BA6NHP3 402 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 F8W031 263 aaPredicted RBP16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 SPDYE6P0CI01 402 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 NF2P35240 595 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 DLGAP5Q15398 846 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 ALDH1L2Q3SY69 923 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 VGLL2Q8N8G2 317 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 USP44Q9H0E7 712 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 RNF186Q9NXI6 227 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 AOX1Q06278 1338 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 FAM205AQ6ZU69 1335 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 MROH5Q6ZUA9 1318 aa16.38■□□□□ 0.21
HMGCS1-205ENST00000508319 TRPA1O75762 1119 aa16.37■□□□□ 0.21
HMGCS1-205ENST00000508319 GYG1P46976 350 aa16.37■□□□□ 0.21
HMGCS1-205ENST00000508319 TTLL12Q14166 644 aaPredicted RBP16.37■□□□□ 0.21
HMGCS1-205ENST00000508319 CFAP100Q494V2 611 aa16.37■□□□□ 0.21
HMGCS1-205ENST00000508319 LRRC24Q50LG9 513 aa16.37■□□□□ 0.21
HMGCS1-205ENST00000508319 TDRD7Q8NHU6 1098 aaKnown RBP16.37■□□□□ 0.21
HMGCS1-205ENST00000508319 FAM84BQ96KN1 310 aaPredicted RBP16.37■□□□□ 0.21
HMGCS1-205ENST00000508319 MFSD14BQ5SR56 506 aa16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 REM2Q8IYK8 340 aaPredicted RBP16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 PRMT6Q96LA8 375 aaPredicted RBP16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 MCOLN1Q9GZU1 580 aa16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 DEFB129Q9H1M3 183 aa16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 RNF39Q9H2S5 420 aa16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 SMC4Q9NTJ3 1288 aa16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 LAMB1P07942 1786 aa16.36■□□□□ 0.21
HMGCS1-205ENST00000508319 CLRN2A0PK11 232 aa16.35■□□□□ 0.21
HMGCS1-205ENST00000508319 CCER2I3L3R5 266 aa16.35■□□□□ 0.21
HMGCS1-205ENST00000508319 HIBADHP31937 336 aaKnown RBP16.35■□□□□ 0.21
HMGCS1-205ENST00000508319 KLHDC4Q8TBB5 520 aa16.35■□□□□ 0.21
HMGCS1-205ENST00000508319 PTPN12Q05209 780 aaKnown RBP16.34■□□□□ 0.21
HMGCS1-205ENST00000508319 PRKG1Q13976 671 aa16.34■□□□□ 0.21
HMGCS1-205ENST00000508319 METTL24Q5JXM2 366 aa16.34■□□□□ 0.21
HMGCS1-205ENST00000508319 FZD1Q9UP38 647 aa16.34■□□□□ 0.21
HMGCS1-205ENST00000508319 PPP2R3BQ9Y5P8 575 aa16.34■□□□□ 0.21
HMGCS1-205ENST00000508319 OTOFQ9HC10 1997 aa16.34■□□□□ 0.21
HMGCS1-205ENST00000508319 MYH13Q9UKX3 1938 aa16.33■□□□□ 0.21
HMGCS1-205ENST00000508319 MYO1BO43795 1136 aa16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 PDE8BO95263 885 aa16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 CT47B1P0C2W7 299 aaPredicted RBP16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 DGKZQ13574 1117 aa16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 LDLRAD1Q5T700 205 aa16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 ARMC9Q7Z3E5 817 aa16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 FBXO33Q7Z6M2 555 aa16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 ANGEL1Q9UNK9 670 aaKnown RBP16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 TTF2Q9UNY4 1162 aaKnown RBP16.33■□□□□ 0.2
HMGCS1-205ENST00000508319 RFX5P48382 616 aaPredicted RBP16.32■□□□□ 0.2
HMGCS1-205ENST00000508319 GRIK5Q16478 980 aa16.32■□□□□ 0.2
HMGCS1-205ENST00000508319 VEZTQ9HBM0 779 aa16.32■□□□□ 0.2
HMGCS1-205ENST00000508319 SERPINA10Q9UK55 444 aa16.32■□□□□ 0.2
HMGCS1-205ENST00000508319 IQSEC3Q9UPP2 1182 aaPredicted RBP16.32■□□□□ 0.2
HMGCS1-205ENST00000508319 KIF16BQ96L93 1317 aa16.31■□□□□ 0.2
HMGCS1-205ENST00000508319 FGFR2P21802 821 aa16.31■□□□□ 0.2
HMGCS1-205ENST00000508319 RBM5P52756 815 aaKnown RBP eCLIP16.31■□□□□ 0.2
HMGCS1-205ENST00000508319 MKRN3Q13064 507 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-205ENST00000508319 MAP3K11Q16584 847 aa16.31■□□□□ 0.2
HMGCS1-205ENST00000508319 SPDYE2Q495Y8 402 aa16.31■□□□□ 0.2
HMGCS1-205ENST00000508319 VPS37DQ86XT2 251 aa16.31■□□□□ 0.2
HMGCS1-205ENST00000508319 CCDC85CA6NKD9 419 aa16.3■□□□□ 0.2
HMGCS1-205ENST00000508319 TM4SF4P48230 202 aa16.3■□□□□ 0.2
HMGCS1-205ENST00000508319 PUM3Q15397 648 aaKnown RBP16.3■□□□□ 0.2
HMGCS1-205ENST00000508319 NBPF12Q5TAG4 269 aaPredicted RBP16.3■□□□□ 0.2
HMGCS1-205ENST00000508319 NOB1Q9ULX3 412 aaKnown RBP16.3■□□□□ 0.2
HMGCS1-205ENST00000508319 EYA2O00167 538 aa16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 BCAMP50895 628 aa16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 CHAF1AQ13111 956 aaPredicted RBP16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 RASA3Q14644 834 aa16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 CAVIN4Q5BKX8 364 aa16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 SPRYD7Q5W111 196 aa16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 ATG9AQ7Z3C6 839 aa16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 DZIP1LQ8IYY4 767 aaKnown RBP16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 ZNF70Q9UC06 446 aaPredicted RBP16.29■□□□□ 0.2
HMGCS1-205ENST00000508319 UBTFL1P0CB47 393 aaPredicted RBP16.28■□□□□ 0.2
HMGCS1-205ENST00000508319 CRKP46108 304 aa16.28■□□□□ 0.2
HMGCS1-205ENST00000508319 TNFAIP1Q13829 316 aa16.28■□□□□ 0.2
HMGCS1-205ENST00000508319 SUPT20HL1Q3ZLR7 823 aa16.28■□□□□ 0.2
HMGCS1-205ENST00000508319 CDAN1Q8IWY9 1227 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms