RNA–Protein interactions for RNA: ENST00000503547.1

NR1I3-218, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 535 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-218	ENST00000503547	ALDH1A1	P00352	501 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	IFIT5	Q13325	482 aa	Known RBP	11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	NOM1	Q5C9Z4	860 aa	Known RBP	11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	ZNF804A	Q7Z570	1209 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	HELB	Q8NG08	1087 aa	Predicted RBP	11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	DNAAF4	Q8WXU2	420 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	SLC10A4	Q96EP9	437 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	PLA2G12B	Q9BX93	195 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	DEFB129	Q9H1M3	183 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	VEZT	Q9HBM0	779 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	CD209	Q9NNX6	404 aa		11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	MKI67	P46013	3256 aa	Known RBP	11.34	□□□□□ -0.59
NR1I3-218	ENST00000503547	CLRN2	A0PK11	232 aa		11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	MANSC4	A6NHS7	340 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	RBM5	P52756	815 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	TAF7L	Q5H9L4	462 aa		11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	WWC1	Q8IX03	1113 aa		11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	LINS1	Q8NG48	757 aa		11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	R3HDML	Q9H3Y0	253 aa		11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	JAG2	Q9Y219	1238 aa		11.33	□□□□□ -0.6
NR1I3-218	ENST00000503547	SNAP23	O00161	211 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	PLIN1	O60240	522 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	NPM3	O75607	178 aa	Known RBP	11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	CSF1R	P07333	972 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	CFAP100	Q494V2	611 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	LDLRAD1	Q5T700	205 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	WNK4	Q96J92	1243 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	TRIM17	Q9Y577	477 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	PPP2R3B	Q9Y5P8	575 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	SSC5D	A1L4H1	1573 aa		11.32	□□□□□ -0.6
NR1I3-218	ENST00000503547	CEP290	O15078	2479 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	ZBTB48	P10074	688 aa	Predicted RBP	11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	CASP7	P55210	303 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	INHBE	P58166	350 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	CCDC27	Q2M243	656 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	SUPT20HL1	Q3ZLR7	823 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	IFNL1	Q8IU54	200 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	CERS5	Q8N5B7	392 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	ZBED3	Q96IU2	234 aa	Predicted RBP	11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	CLMN	Q96JQ2	1002 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	CFHR5	Q9BXR6	569 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	PCDHAC2	Q9Y5I4	1007 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	IL16	Q14005	1332 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	FANCI	Q9NVI1	1328 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	BRCA2	P51587	3418 aa		11.31	□□□□□ -0.6
NR1I3-218	ENST00000503547	SPDYE2B	A6NHP3	402 aa		11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547	SPDYE6	P0CI01	402 aa		11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547	IREB2	P48200	963 aa	Known RBP	11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547	CCDC57	Q2TAC2	916 aa		11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547	OTUD7B	Q6GQQ9	843 aa		11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547	MTMR14	Q8NCE2	650 aa		11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547	CNNM1	Q9NRU3	951 aa		11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547	SALL2	Q9Y467	1007 aa	Predicted RBP	11.3	□□□□□ -0.6
NR1I3-218	ENST00000503547		F6X3S4	739 aa		11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	IL1R1	P14778	569 aa		11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	MAP3K11	Q16584	847 aa		11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	CCDC184	Q52MB2	194 aa		11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	LMBR1L	Q6UX01	489 aa		11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	OTOP1	Q7RTM1	612 aa		11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	ERO1A	Q96HE7	468 aa		11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	ZNF594	Q96JF6	807 aa	Predicted RBP	11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	PRMT6	Q96LA8	375 aa	Predicted RBP	11.29	□□□□□ -0.6
NR1I3-218	ENST00000503547	FKBP1A	P62942	108 aa	Known RBP	11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	FOXO4	P98177	505 aa		11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	CRHR2	Q13324	411 aa		11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	TNFAIP1	Q13829	316 aa		11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	RASA3	Q14644	834 aa		11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	LDHAL6A	Q6ZMR3	332 aa		11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	C15orf52	Q6ZUT6	534 aa	Known RBP	11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	CD99L2	Q8TCZ2	262 aa		11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	IRS2	Q9Y4H2	1338 aa		11.28	□□□□□ -0.6
NR1I3-218	ENST00000503547	EXOSC9	Q06265	439 aa	Known RBP	11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	MFSD14B	Q5SR56	506 aa		11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	INTS3	Q68E01	1043 aa	Known RBP	11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	ANKRD13A	Q8IZ07	590 aa		11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	OPTN	Q96CV9	577 aa		11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	ELP3	Q9H9T3	547 aa		11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	TTF2	Q9UNY4	1162 aa	Known RBP	11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	ZSWIM8	A7E2V4	1837 aa		11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	AOX1	Q06278	1338 aa		11.27	□□□□□ -0.61
NR1I3-218	ENST00000503547	POTEF	A5A3E0	1075 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	UNCX	A6NJT0	531 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	GRM8	O00222	908 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	VAMP4	O75379	141 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	EPHA10	Q5JZY3	1008 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	BEND3	Q5T5X7	828 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	SLC4A10	Q6U841	1118 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	VPS37D	Q86XT2	251 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	GCC1	Q96CN9	775 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	EFCC1	Q9HA90	598 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	MRS2	Q9HD23	443 aa		11.26	□□□□□ -0.61
NR1I3-218	ENST00000503547	TCP10L2	B9ZVM9	353 aa		11.25	□□□□□ -0.61
NR1I3-218	ENST00000503547	FRAT2	O75474	233 aa	Predicted RBP	11.25	□□□□□ -0.61
NR1I3-218	ENST00000503547	USP2	O75604	605 aa	Predicted RBP	11.25	□□□□□ -0.61
NR1I3-218	ENST00000503547	HIBADH	P31937	336 aa	Known RBP	11.25	□□□□□ -0.61
NR1I3-218	ENST00000503547	GJA5	P36382	358 aa		11.25	□□□□□ -0.61
NR1I3-218	ENST00000503547	GYG1	P46976	350 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms