RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 UBE3CQ15386 1083 aa26.57■■□□□ 1.84
PCDH1-204ENST00000503492 PTF1AQ7RTS3 328 aa26.57■■□□□ 1.84
PCDH1-204ENST00000503492 DDX11Q96FC9 970 aa26.57■■□□□ 1.84
PCDH1-204ENST00000503492 NSUN7Q8NE18 718 aaKnown RBP26.56■■□□□ 1.84
PCDH1-204ENST00000503492 PPP1R9BQ96SB3 815 aa26.56■■□□□ 1.84
PCDH1-204ENST00000503492 CTDNEP1O95476 244 aa26.56■■□□□ 1.84
PCDH1-204ENST00000503492 CCDC173Q0VFZ6 552 aa26.56■■□□□ 1.84
PCDH1-204ENST00000503492 CLEC4GQ6UXB4 293 aa26.56■■□□□ 1.84
PCDH1-204ENST00000503492 ZNF532Q9HCE3 1301 aa26.56■■□□□ 1.84
PCDH1-204ENST00000503492 RRAGDQ9NQL2 400 aaPredicted RBP26.56■■□□□ 1.84
PCDH1-204ENST00000503492 WWC3Q9ULE0 1092 aa26.56■■□□□ 1.84
PCDH1-204ENST00000503492 PDE6AP16499 860 aa26.55■■□□□ 1.84
PCDH1-204ENST00000503492 IGHMBP2P38935 993 aaKnown RBP26.55■■□□□ 1.84
PCDH1-204ENST00000503492 KRT85P78386 507 aa26.55■■□□□ 1.84
PCDH1-204ENST00000503492 FBXL16Q8N461 479 aa26.55■■□□□ 1.84
PCDH1-204ENST00000503492 PHF14O94880 888 aa26.55■■□□□ 1.84
PCDH1-204ENST00000503492 PDIA3P30101 505 aaKnown RBP26.55■■□□□ 1.84
PCDH1-204ENST00000503492 CCT2P78371 535 aaKnown RBP26.55■■□□□ 1.84
PCDH1-204ENST00000503492 CCDC183Q5T5S1 534 aa26.55■■□□□ 1.84
PCDH1-204ENST00000503492 SPATA5Q8NB90 893 aa26.55■■□□□ 1.84
PCDH1-204ENST00000503492 ZNF274Q96GC6 653 aaPredicted RBP26.55■■□□□ 1.84
PCDH1-204ENST00000503492 TCRBV5S4A2TA0A5A2 114 aa26.54■■□□□ 1.84
PCDH1-204ENST00000503492 RASGRF1Q13972 1273 aa26.54■■□□□ 1.84
PCDH1-204ENST00000503492 TTC6Q86TZ1 520 aa26.54■■□□□ 1.84
PCDH1-204ENST00000503492 COL4A1P02462 1669 aa26.54■■□□□ 1.84
PCDH1-204ENST00000503492 ANP32BQ92688 251 aaKnown RBP26.54■■□□□ 1.84
PCDH1-204ENST00000503492 GPHNQ9NQX3 736 aaPredicted RBP26.54■■□□□ 1.84
PCDH1-204ENST00000503492 ZNF213O14771 459 aa26.53■■□□□ 1.84
PCDH1-204ENST00000503492 MB21D2Q8IYB1 491 aaPredicted RBP26.53■■□□□ 1.84
PCDH1-204ENST00000503492 TSPY26PQ9H489 355 aa26.53■■□□□ 1.84
PCDH1-204ENST00000503492 FNBP4Q8N3X1 1017 aaPredicted RBP26.53■■□□□ 1.84
PCDH1-204ENST00000503492 FAM184AQ8NB25 1140 aa26.53■■□□□ 1.84
PCDH1-204ENST00000503492 NCOA5Q9HCD5 579 aaKnown RBP26.53■■□□□ 1.84
PCDH1-204ENST00000503492 PTPDC1A2A3K4 754 aa26.52■■□□□ 1.84
PCDH1-204ENST00000503492 EVCP57679 992 aa26.52■■□□□ 1.84
PCDH1-204ENST00000503492 NAP1L2Q9ULW6 460 aaPredicted RBP26.52■■□□□ 1.84
PCDH1-204ENST00000503492 RESTQ13127 1097 aa26.51■■□□□ 1.84
PCDH1-204ENST00000503492 ERFEQ4G0M1 354 aa26.51■■□□□ 1.84
PCDH1-204ENST00000503492 SMIM5Q71RC9 77 aa26.51■■□□□ 1.84
PCDH1-204ENST00000503492 CNTNAP4Q9C0A0 1308 aa26.51■■□□□ 1.83
PCDH1-204ENST00000503492 CHRNDQ07001 517 aa26.51■■□□□ 1.83
PCDH1-204ENST00000503492 NBPF3Q9H094 633 aa26.51■■□□□ 1.83
PCDH1-204ENST00000503492 PRC1O43663 620 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 C3orf67Q6ZVT6 689 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 NCOA7Q8NI08 942 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 ELP1O95163 1332 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 H3BQV1 296 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 MCM5P33992 734 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 BCAMP50895 628 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 ANTXR2P58335 489 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 HMGN5P82970 282 aaKnown RBP26.5■■□□□ 1.83
PCDH1-204ENST00000503492 IFFO2Q5TF58 517 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 DOCK2Q92608 1830 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 SALL1Q9NSC2 1324 aa26.5■■□□□ 1.83
PCDH1-204ENST00000503492 TFIP11Q9UBB9 837 aaKnown RBP26.49■■□□□ 1.83
PCDH1-204ENST00000503492 TRIM44Q96DX7 344 aaPredicted RBP26.49■■□□□ 1.83
PCDH1-204ENST00000503492 STRBPQ96SI9 672 aaKnown RBP26.49■■□□□ 1.83
PCDH1-204ENST00000503492 RNF214Q8ND24 703 aa26.48■■□□□ 1.83
PCDH1-204ENST00000503492 CDC5LQ99459 802 aaKnown RBP26.48■■□□□ 1.83
PCDH1-204ENST00000503492 BCL2L12Q9HB09 334 aa26.48■■□□□ 1.83
PCDH1-204ENST00000503492 RALYLQ86SE5 291 aaKnown RBP26.48■■□□□ 1.83
PCDH1-204ENST00000503492 APPP05067 770 aa26.47■■□□□ 1.83
PCDH1-204ENST00000503492 MAGEB6Q8N7X4 407 aa26.47■■□□□ 1.83
PCDH1-204ENST00000503492 SCAND2PQ9GZW5 306 aaPredicted RBP26.47■■□□□ 1.83
PCDH1-204ENST00000503492 LETM1O95202 739 aaPredicted RBP26.47■■□□□ 1.83
PCDH1-204ENST00000503492 MAP3K12Q12852 859 aa26.47■■□□□ 1.83
PCDH1-204ENST00000503492 SF3B3Q15393 1217 aaKnown RBP26.47■■□□□ 1.83
PCDH1-204ENST00000503492 TBC1D9BQ66K14 1250 aa26.47■■□□□ 1.83
PCDH1-204ENST00000503492 BICDL1Q6ZP65 573 aa26.47■■□□□ 1.83
PCDH1-204ENST00000503492 TBC1D10CQ8IV04 446 aa26.47■■□□□ 1.83
PCDH1-204ENST00000503492 AIDAQ96BJ3 306 aa26.47■■□□□ 1.83
PCDH1-204ENST00000503492 ZSCAN16Q9H4T2 348 aaPredicted RBP26.46■■□□□ 1.83
PCDH1-204ENST00000503492 USP21Q9UK80 565 aa26.46■■□□□ 1.83
PCDH1-204ENST00000503492 DENND2AQ9ULE3 1009 aa26.46■■□□□ 1.83
PCDH1-204ENST00000503492 NAA16Q6N069 864 aaPredicted RBP26.46■■□□□ 1.83
PCDH1-204ENST00000503492 LEO1Q8WVC0 666 aaPredicted RBP26.46■■□□□ 1.83
PCDH1-204ENST00000503492 SPATA32Q96LK8 384 aa26.46■■□□□ 1.83
PCDH1-204ENST00000503492 SCN7AQ01118 1682 aa26.46■■□□□ 1.83
PCDH1-204ENST00000503492 BTAF1O14981 1849 aa26.45■■□□□ 1.83
PCDH1-204ENST00000503492 PPFIA3O75145 1194 aa26.45■■□□□ 1.82
PCDH1-204ENST00000503492 FOSBP53539 338 aa26.45■■□□□ 1.82
PCDH1-204ENST00000503492 NKX2-3Q8TAU0 364 aa26.45■■□□□ 1.82
PCDH1-204ENST00000503492 WDR19Q8NEZ3 1342 aa26.45■■□□□ 1.82
PCDH1-204ENST00000503492 KIF3AQ9Y496 699 aa26.44■■□□□ 1.82
PCDH1-204ENST00000503492 TAF1P21675 1872 aa26.44■■□□□ 1.82
PCDH1-204ENST00000503492 CASZ1Q86V15 1759 aa26.44■■□□□ 1.82
PCDH1-204ENST00000503492 KLF18A0A0U1RQI7 1052 aa26.44■■□□□ 1.82
PCDH1-204ENST00000503492 RC3H1Q5TC82 1133 aaKnown RBP26.44■■□□□ 1.82
PCDH1-204ENST00000503492 ANKRD18AQ8IVF6 992 aa26.44■■□□□ 1.82
PCDH1-204ENST00000503492 CHMP4CQ96CF2 233 aa26.44■■□□□ 1.82
PCDH1-204ENST00000503492 PDLIM2Q96JY6 352 aa26.44■■□□□ 1.82
PCDH1-204ENST00000503492 RGL2O15211 777 aa26.43■■□□□ 1.82
PCDH1-204ENST00000503492 FAM182BQ5T319 152 aa26.43■■□□□ 1.82
PCDH1-204ENST00000503492 HPS5Q9UPZ3 1129 aa26.43■■□□□ 1.82
PCDH1-204ENST00000503492 THSD7AQ9UPZ6 1657 aa26.43■■□□□ 1.82
PCDH1-204ENST00000503492 RPS6KA4O75676 772 aa26.43■■□□□ 1.82
PCDH1-204ENST00000503492 MBD4O95243 580 aa26.43■■□□□ 1.82
PCDH1-204ENST00000503492 FDPSP14324 419 aaKnown RBP26.43■■□□□ 1.82
PCDH1-204ENST00000503492 ALX1Q15699 326 aa26.43■■□□□ 1.82
PCDH1-204ENST00000503492 SRP68Q9UHB9 627 aaKnown RBP26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms