RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 ATP2B3Q16720 1220 aa9.18□□□□□ -0.94
SYNE1-231ENST00000498751 RUFY3Q7L099 469 aa9.18□□□□□ -0.94
SYNE1-231ENST00000498751 TNPO1Q92973 898 aaKnown RBP9.18□□□□□ -0.94
SYNE1-231ENST00000498751 AGXT2Q9BYV1 514 aa9.18□□□□□ -0.94
SYNE1-231ENST00000498751 NYXQ9GZU5 481 aa9.18□□□□□ -0.94
SYNE1-231ENST00000498751 BCL2L12Q9HB09 334 aa9.18□□□□□ -0.94
SYNE1-231ENST00000498751 LIMCH1Q9UPQ0 1083 aa9.18□□□□□ -0.94
SYNE1-231ENST00000498751 AKAP11Q9UKA4 1901 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 DOCK2Q92608 1830 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 ZNF804BA4D1E1 1349 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 PDS5AQ29RF7 1337 aaKnown RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 RNF113AO15541 343 aaKnown RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 HSP90AA1P07900 732 aaKnown RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 UBE3CQ15386 1083 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 PUM3Q15397 648 aaKnown RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 TAF7LQ5H9L4 462 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 SLC27A3Q5K4L6 730 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 ZSCAN25Q6NSZ9 544 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 ZNF589Q86UQ0 364 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 ZNF687Q8N1G0 1237 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 SYNE4Q8N205 404 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 APPBP2Q92624 585 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 CDC5LQ99459 802 aaKnown RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 ISY1Q9ULR0 285 aaKnown RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 NIP7Q9Y221 180 aaKnown RBP eCLIP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 ZNF330Q9Y3S2 320 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-231ENST00000498751 A0A1B0GUL6 1792 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 C4AP0C0L4 1744 aa9.17□□□□□ -0.94
SYNE1-231ENST00000498751 CARMIL3Q8ND23 1372 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 SLC34A2O95436 690 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 BRD1O95696 1058 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 HMGB1P09429 215 aaKnown RBP9.16□□□□□ -0.94
SYNE1-231ENST00000498751 SKOR2Q2VWA4 1001 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-231ENST00000498751 METTL24Q5JXM2 366 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 RGS22Q8NE09 1264 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 NEUROD6Q96NK8 337 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 CNNM1Q9NRU3 951 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 BSDC1Q9NW68 430 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-231ENST00000498751 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-231ENST00000498751 PCDHGA4Q9Y5G9 962 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 CYP46A1Q9Y6A2 500 aa9.16□□□□□ -0.94
SYNE1-231ENST00000498751 MAST3O60307 1309 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 WDR19Q8NEZ3 1342 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 NUDT7P0C024 238 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 RPS6KB1P23443 525 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 AK2P54819 239 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 EVCP57679 992 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 UBE4AQ14139 1066 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 ADCK5Q3MIX3 580 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 TTC39AQ5SRH9 613 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 CCDC102BQ68D86 513 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 PRPF40BQ6NWY9 871 aaKnown RBP9.15□□□□□ -0.94
SYNE1-231ENST00000498751 FAM196AQ6ZSG2 479 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 DDX46Q7L014 1031 aaKnown RBP9.15□□□□□ -0.94
SYNE1-231ENST00000498751 SEPT12Q8IYM1 358 aa9.15□□□□□ -0.94
SYNE1-231ENST00000498751 EDC3Q96F86 508 aaKnown RBP9.15□□□□□ -0.94
SYNE1-231ENST00000498751 RTCBQ9Y3I0 505 aaKnown RBP9.15□□□□□ -0.94
SYNE1-231ENST00000498751 GOLIM4O00461 696 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 CYP21A2P08686 494 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 HSPD1P10809 573 aaKnown RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 SLC5A1P13866 664 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 CASTP20810 708 aaKnown RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 ADD2P35612 726 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 IGHMBP2P38935 993 aaKnown RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 MCAMP43121 646 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 BLOC1S2Q6QNY1 142 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 ZGPATQ8N5A5 531 aaKnown RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 CHMP4CQ96CF2 233 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 DNAJC2Q99543 621 aaKnown RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 UPF3BQ9BZI7 483 aaKnown RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 BCL11AQ9H165 835 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 PDRG1Q9NUG6 133 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 CTNNA3Q9UI47 895 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 CCNL1Q9UK58 526 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 ZDHHC9Q9Y397 364 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 RGPD3A6NKT7 1758 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-231ENST00000498751 RGPD4Q7Z3J3 1758 aa9.14□□□□□ -0.95
SYNE1-231ENST00000498751 MYH7P12883 1935 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 UBR3Q6ZT12 1888 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 SEMA3EO15041 775 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 BAG4O95429 457 aaKnown RBP9.13□□□□□ -0.95
SYNE1-231ENST00000498751 ADORA1P30542 326 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 ZAP70P43403 619 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 SCARF1Q14162 830 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 ALX1Q15699 326 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 TPTE2Q6XPS3 522 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 PTF1AQ7RTS3 328 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 OSBP2Q969R2 916 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 JAKMIP1Q96N16 626 aaKnown RBP9.13□□□□□ -0.95
SYNE1-231ENST00000498751 NEK1Q96PY6 1258 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 MPHOSPH8Q99549 860 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 CASZ1Q86V15 1759 aa9.13□□□□□ -0.95
SYNE1-231ENST00000498751 KAT6BQ8WYB5 2073 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 WDR33Q9C0J8 1336 aaKnown RBP9.12□□□□□ -0.95
SYNE1-231ENST00000498751 TCRBV5S4A2TA0A5A2 114 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 GOLGA6L22H0YM25 854 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 PLSCR1O15162 318 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 FOXP2O15409 715 aa9.12□□□□□ -0.95
SYNE1-231ENST00000498751 HCLS1P14317 486 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms