RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 PKN2Q16513 984 aaKnown RBP12.22□□□□□ -0.45
UBR4-216ENST00000494503 SLC10A4Q96EP9 437 aa12.22□□□□□ -0.45
UBR4-216ENST00000494503 DEFB129Q9H1M3 183 aa12.22□□□□□ -0.45
UBR4-216ENST00000494503 C9orf78Q9NZ63 289 aaPredicted RBP12.22□□□□□ -0.45
UBR4-216ENST00000494503 TNRC18O15417 2968 aaPredicted RBP12.21□□□□□ -0.45
UBR4-216ENST00000494503 ANP32CO43423 234 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 FKTNO75072 461 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 CSF1RP07333 972 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 MMP14P50281 582 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 CFAP100Q494V2 611 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 LMBR1LQ6UX01 489 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 LDHAL6AQ6ZMR3 332 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 ZNF594Q96JF6 807 aaPredicted RBP12.21□□□□□ -0.45
UBR4-216ENST00000494503 PCDHAC2Q9Y5I4 1007 aa12.21□□□□□ -0.45
UBR4-216ENST00000494503 TM4SF4P48230 202 aa12.2□□□□□ -0.46
UBR4-216ENST00000494503 CASP7P55210 303 aa12.2□□□□□ -0.46
UBR4-216ENST00000494503 SPRYD7Q5W111 196 aa12.2□□□□□ -0.46
UBR4-216ENST00000494503 CERS5Q8N5B7 392 aa12.2□□□□□ -0.46
UBR4-216ENST00000494503 COL1A1P02452 1464 aaPredicted RBP12.2□□□□□ -0.46
UBR4-216ENST00000494503 GRM8O00222 908 aa12.19□□□□□ -0.46
UBR4-216ENST00000494503 VAMP4O75379 141 aa12.19□□□□□ -0.46
UBR4-216ENST00000494503 ALDH1A1P00352 501 aa12.19□□□□□ -0.46
UBR4-216ENST00000494503 IREB2P48200 963 aaKnown RBP12.19□□□□□ -0.46
UBR4-216ENST00000494503 FOXO4P98177 505 aa12.19□□□□□ -0.46
UBR4-216ENST00000494503 SUPT20HL1Q3ZLR7 823 aa12.19□□□□□ -0.46
UBR4-216ENST00000494503 VPS37DQ86XT2 251 aa12.19□□□□□ -0.46
UBR4-216ENST00000494503 CLMNQ96JQ2 1002 aa12.19□□□□□ -0.46
UBR4-216ENST00000494503 SPDYE2BA6NHP3 402 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 MANSC4A6NHS7 340 aaPredicted RBP12.18□□□□□ -0.46
UBR4-216ENST00000494503 FRAT2O75474 233 aaPredicted RBP12.18□□□□□ -0.46
UBR4-216ENST00000494503 SPDYE6P0CI01 402 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 MFSD14BQ5SR56 506 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 BEND3Q5T5X7 828 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 FBXO46Q6PJ61 603 aaPredicted RBP12.18□□□□□ -0.46
UBR4-216ENST00000494503 FAM9BQ8IZU0 186 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 WNK4Q96J92 1243 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 TRIM17Q9Y577 477 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 PPP2R3BQ9Y5P8 575 aa12.18□□□□□ -0.46
UBR4-216ENST00000494503 IL1R1P14778 569 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 GYG1P46976 350 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 CHAF1AQ13111 956 aaPredicted RBP12.17□□□□□ -0.46
UBR4-216ENST00000494503 EPHA10Q5JZY3 1008 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 LDLRAD1Q5T700 205 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 NBPF12Q5TAG4 269 aaPredicted RBP12.17□□□□□ -0.46
UBR4-216ENST00000494503 OTUD7BQ6GQQ9 843 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 IFNL1Q8IU54 200 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 WDR63Q8IWG1 891 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 ZBED3Q96IU2 234 aaPredicted RBP12.17□□□□□ -0.46
UBR4-216ENST00000494503 PRMT6Q96LA8 375 aaPredicted RBP12.17□□□□□ -0.46
UBR4-216ENST00000494503 R3HDMLQ9H3Y0 253 aa12.17□□□□□ -0.46
UBR4-216ENST00000494503 TTF2Q9UNY4 1162 aaKnown RBP12.17□□□□□ -0.46
UBR4-216ENST00000494503 TCP10L2B9ZVM9 353 aa12.16□□□□□ -0.46
UBR4-216ENST00000494503 ZBTB48P10074 688 aaPredicted RBP12.16□□□□□ -0.46
UBR4-216ENST00000494503 TNFAIP1Q13829 316 aa12.16□□□□□ -0.46
UBR4-216ENST00000494503 RASA3Q14644 834 aa12.16□□□□□ -0.46
UBR4-216ENST00000494503 SRCIN1Q9C0H9 1055 aa12.16□□□□□ -0.46
UBR4-216ENST00000494503 ELP3Q9H9T3 547 aa12.16□□□□□ -0.46
UBR4-216ENST00000494503 IQSEC3Q9UPP2 1182 aaPredicted RBP12.16□□□□□ -0.46
UBR4-216ENST00000494503 SSC5DA1L4H1 1573 aa12.16□□□□□ -0.46
UBR4-216ENST00000494503 OTOFQ9HC10 1997 aa12.16□□□□□ -0.46
UBR4-216ENST00000494503 HIBADHP31937 336 aaKnown RBP12.15□□□□□ -0.46
UBR4-216ENST00000494503 INHBEP58166 350 aa12.15□□□□□ -0.46
UBR4-216ENST00000494503 PRPF38BQ5VTL8 546 aaKnown RBP12.15□□□□□ -0.46
UBR4-216ENST00000494503 C15orf52Q6ZUT6 534 aaKnown RBP12.15□□□□□ -0.46
UBR4-216ENST00000494503 ANKRD13AQ8IZ07 590 aa12.15□□□□□ -0.46
UBR4-216ENST00000494503 MTMR14Q8NCE2 650 aa12.15□□□□□ -0.46
UBR4-216ENST00000494503 TDRD3Q9H7E2 651 aaKnown RBP12.15□□□□□ -0.46
UBR4-216ENST00000494503 ARAP2Q8WZ64 1704 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 AOX1Q06278 1338 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 IRS2Q9Y4H2 1338 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 AK9Q5TCS8 1911 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 IGF2BP3O00425 579 aaKnown RBP eCLIP12.14□□□□□ -0.47
UBR4-216ENST00000494503 TNNI2P48788 182 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 FKBP1AP62942 108 aaKnown RBP12.14□□□□□ -0.47
UBR4-216ENST00000494503 METTL24Q5JXM2 366 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 CD99L2Q8TCZ2 262 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 SUCLG2Q96I99 432 aa12.14□□□□□ -0.47
UBR4-216ENST00000494503 PUS3Q9BZE2 481 aaKnown RBP12.14□□□□□ -0.47
UBR4-216ENST00000494503 SPINK5Q9NQ38 1064 aaPredicted RBP12.14□□□□□ -0.47
UBR4-216ENST00000494503 ZNF70Q9UC06 446 aaPredicted RBP12.14□□□□□ -0.47
UBR4-216ENST00000494503 KIAA0100Q14667 2235 aaKnown RBP12.14□□□□□ -0.47
UBR4-216ENST00000494503 ALDH1L1O75891 902 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 CRKP46108 304 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 CRHR2Q13324 411 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 UBE4AQ14139 1066 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 MAP3K11Q16584 847 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 CAVIN4Q5BKX8 364 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 NOM1Q5C9Z4 860 aaKnown RBP12.13□□□□□ -0.47
UBR4-216ENST00000494503 OTOP1Q7RTM1 612 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 OPTNQ96CV9 577 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 ERO1AQ96HE7 468 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 CSADQ9Y600 493 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 MYH13Q9UKX3 1938 aa12.13□□□□□ -0.47
UBR4-216ENST00000494503 USP2O75604 605 aaPredicted RBP12.12□□□□□ -0.47
UBR4-216ENST00000494503 SPDYE2Q495Y8 402 aa12.12□□□□□ -0.47
UBR4-216ENST00000494503 DZIP1LQ8IYY4 767 aaKnown RBP12.12□□□□□ -0.47
UBR4-216ENST00000494503 OTUD5Q96G74 571 aa12.12□□□□□ -0.47
UBR4-216ENST00000494503 TMEM39BQ9GZU3 492 aa12.12□□□□□ -0.47
UBR4-216ENST00000494503 BICC1Q9H694 974 aaKnown RBP12.12□□□□□ -0.47
UBR4-216ENST00000494503 TMOD2Q9NZR1 351 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms