RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, human

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LYSMD4-208	ENST00000493256	APOBEC3F	Q8IUX4	373 aa	Known RBP	27.94	■■■□□ 2.06
LYSMD4-208	ENST00000493256	CDCA7L	Q96GN5	454 aa		27.94	■■■□□ 2.06
LYSMD4-208	ENST00000493256	ANKRD44	Q8N8A2	993 aa		27.93	■■■□□ 2.06
LYSMD4-208	ENST00000493256	JAG2	Q9Y219	1238 aa		27.93	■■■□□ 2.06
LYSMD4-208	ENST00000493256	FKBP1A	P62942	108 aa	Known RBP	27.92	■■■□□ 2.06
LYSMD4-208	ENST00000493256	UBE4A	Q14139	1066 aa		27.92	■■■□□ 2.06
LYSMD4-208	ENST00000493256	DLGAP5	Q15398	846 aa		27.92	■■■□□ 2.06
LYSMD4-208	ENST00000493256	CSRNP1	Q96S65	589 aa		27.92	■■■□□ 2.06
LYSMD4-208	ENST00000493256	SAGE1	Q9NXZ1	904 aa		27.92	■■■□□ 2.06
LYSMD4-208	ENST00000493256	RIPOR2	Q9Y4F9	1068 aa		27.92	■■■□□ 2.06
LYSMD4-208	ENST00000493256	AKAP11	Q9UKA4	1901 aa		27.92	■■■□□ 2.06
LYSMD4-208	ENST00000493256		F8W031	263 aa	Predicted RBP	27.91	■■■□□ 2.06
LYSMD4-208	ENST00000493256	NF2	P35240	595 aa		27.91	■■■□□ 2.06
LYSMD4-208	ENST00000493256	TTLL12	Q14166	644 aa	Predicted RBP	27.91	■■■□□ 2.06
LYSMD4-208	ENST00000493256	MTMR14	Q8NCE2	650 aa		27.91	■■■□□ 2.06
LYSMD4-208	ENST00000493256	RNF186	Q9NXI6	227 aa		27.91	■■■□□ 2.06
LYSMD4-208	ENST00000493256	PCDHAC2	Q9Y5I4	1007 aa		27.91	■■■□□ 2.06
LYSMD4-208	ENST00000493256	TRPA1	O75762	1119 aa		27.89	■■■□□ 2.06
LYSMD4-208	ENST00000493256	GYG1	P46976	350 aa		27.89	■■■□□ 2.06
LYSMD4-208	ENST00000493256	ALDH1L2	Q3SY69	923 aa		27.89	■■■□□ 2.06
LYSMD4-208	ENST00000493256	USP44	Q9H0E7	712 aa		27.89	■■■□□ 2.06
LYSMD4-208	ENST00000493256	ECM29	Q5VYK3	1845 aa		27.89	■■■□□ 2.06
LYSMD4-208	ENST00000493256	FAM205A	Q6ZU69	1335 aa		27.89	■■■□□ 2.05
LYSMD4-208	ENST00000493256	MROH5	Q6ZUA9	1318 aa		27.89	■■■□□ 2.05
LYSMD4-208	ENST00000493256	CFAP100	Q494V2	611 aa		27.88	■■■□□ 2.05
LYSMD4-208	ENST00000493256	TRMT2A	Q8IZ69	625 aa	Known RBP	27.88	■■■□□ 2.05
LYSMD4-208	ENST00000493256	TDRD7	Q8NHU6	1098 aa	Known RBP	27.88	■■■□□ 2.05
LYSMD4-208	ENST00000493256	FAM84B	Q96KN1	310 aa	Predicted RBP	27.88	■■■□□ 2.05
LYSMD4-208	ENST00000493256	COL1A1	P02452	1464 aa	Predicted RBP	27.88	■■■□□ 2.05
LYSMD4-208	ENST00000493256	SPDYE2B	A6NHP3	402 aa		27.87	■■■□□ 2.05
LYSMD4-208	ENST00000493256	SPDYE6	P0CI01	402 aa		27.87	■■■□□ 2.05
LYSMD4-208	ENST00000493256	HIBADH	P31937	336 aa	Known RBP	27.87	■■■□□ 2.05
LYSMD4-208	ENST00000493256	LRRC24	Q50LG9	513 aa		27.87	■■■□□ 2.05
LYSMD4-208	ENST00000493256	MCOLN1	Q9GZU1	580 aa		27.87	■■■□□ 2.05
LYSMD4-208	ENST00000493256	SMC4	Q9NTJ3	1288 aa		27.87	■■■□□ 2.05
LYSMD4-208	ENST00000493256	PRKG1	Q13976	671 aa		27.86	■■■□□ 2.05
LYSMD4-208	ENST00000493256	REM2	Q8IYK8	340 aa	Predicted RBP	27.86	■■■□□ 2.05
LYSMD4-208	ENST00000493256	DEFB129	Q9H1M3	183 aa		27.86	■■■□□ 2.05
LYSMD4-208	ENST00000493256	PRMT6	Q96LA8	375 aa	Predicted RBP	27.85	■■■□□ 2.05
LYSMD4-208	ENST00000493256	AOX1	Q06278	1338 aa		27.85	■■■□□ 2.05
LYSMD4-208	ENST00000493256	CLRN2	A0PK11	232 aa		27.84	■■■□□ 2.05
LYSMD4-208	ENST00000493256	METTL24	Q5JXM2	366 aa		27.84	■■■□□ 2.05
LYSMD4-208	ENST00000493256	MFSD14B	Q5SR56	506 aa		27.84	■■■□□ 2.05
LYSMD4-208	ENST00000493256	ARMC9	Q7Z3E5	817 aa		27.84	■■■□□ 2.05
LYSMD4-208	ENST00000493256	KLHDC4	Q8TBB5	520 aa		27.84	■■■□□ 2.05
LYSMD4-208	ENST00000493256	PTPN12	Q05209	780 aa	Known RBP	27.83	■■■□□ 2.05
LYSMD4-208	ENST00000493256	DGKZ	Q13574	1117 aa		27.83	■■■□□ 2.05
LYSMD4-208	ENST00000493256	VGLL2	Q8N8G2	317 aa		27.83	■■■□□ 2.05
LYSMD4-208	ENST00000493256	ARAP2	Q8WZ64	1704 aa		27.83	■■■□□ 2.05
LYSMD4-208	ENST00000493256	CCER2	I3L3R5	266 aa		27.82	■■■□□ 2.04
LYSMD4-208	ENST00000493256	MYO1B	O43795	1136 aa		27.82	■■■□□ 2.04
LYSMD4-208	ENST00000493256	FZD1	Q9UP38	647 aa		27.82	■■■□□ 2.04
LYSMD4-208	ENST00000493256	PPP2R3B	Q9Y5P8	575 aa		27.82	■■■□□ 2.04
LYSMD4-208	ENST00000493256	SSC5D	A1L4H1	1573 aa		27.82	■■■□□ 2.04
LYSMD4-208	ENST00000493256	CCDC85C	A6NKD9	419 aa		27.81	■■■□□ 2.04
LYSMD4-208	ENST00000493256	RBM5	P52756	815 aa	Known RBP eCLIP	27.81	■■■□□ 2.04
LYSMD4-208	ENST00000493256	LDLRAD1	Q5T700	205 aa		27.81	■■■□□ 2.04
LYSMD4-208	ENST00000493256	FBXO33	Q7Z6M2	555 aa		27.81	■■■□□ 2.04
LYSMD4-208	ENST00000493256	VEZT	Q9HBM0	779 aa		27.81	■■■□□ 2.04
LYSMD4-208	ENST00000493256	ANGEL1	Q9UNK9	670 aa	Known RBP	27.81	■■■□□ 2.04
LYSMD4-208	ENST00000493256	PDE8B	O95263	885 aa		27.8	■■■□□ 2.04
LYSMD4-208	ENST00000493256	TTF2	Q9UNY4	1162 aa	Known RBP	27.8	■■■□□ 2.04
LYSMD4-208	ENST00000493256	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	27.8	■■■□□ 2.04
LYSMD4-208	ENST00000493256	CT47B1	P0C2W7	299 aa	Predicted RBP	27.79	■■■□□ 2.04
LYSMD4-208	ENST00000493256	MKRN3	Q13064	507 aa	Known RBP	27.79	■■■□□ 2.04
LYSMD4-208	ENST00000493256	VPS37D	Q86XT2	251 aa		27.79	■■■□□ 2.04
LYSMD4-208	ENST00000493256	SERPINA10	Q9UK55	444 aa		27.78	■■■□□ 2.04
LYSMD4-208	ENST00000493256	RFX5	P48382	616 aa	Predicted RBP	27.77	■■■□□ 2.04
LYSMD4-208	ENST00000493256	CAVIN4	Q5BKX8	364 aa		27.77	■■■□□ 2.04
LYSMD4-208	ENST00000493256	NOB1	Q9ULX3	412 aa	Known RBP	27.77	■■■□□ 2.04
LYSMD4-208	ENST00000493256	TM4SF4	P48230	202 aa		27.76	■■■□□ 2.03
LYSMD4-208	ENST00000493256	CHAF1A	Q13111	956 aa	Predicted RBP	27.76	■■■□□ 2.03
LYSMD4-208	ENST00000493256	GRIK5	Q16478	980 aa		27.76	■■■□□ 2.03
LYSMD4-208	ENST00000493256	MAP3K11	Q16584	847 aa		27.76	■■■□□ 2.03
LYSMD4-208	ENST00000493256	BCAM	P50895	628 aa		27.75	■■■□□ 2.03
LYSMD4-208	ENST00000493256	RASA3	Q14644	834 aa		27.75	■■■□□ 2.03
LYSMD4-208	ENST00000493256	SUPT20HL1	Q3ZLR7	823 aa		27.75	■■■□□ 2.03
LYSMD4-208	ENST00000493256	SPDYE2	Q495Y8	402 aa		27.75	■■■□□ 2.03
LYSMD4-208	ENST00000493256	NBPF12	Q5TAG4	269 aa	Predicted RBP	27.75	■■■□□ 2.03
LYSMD4-208	ENST00000493256	SPRYD7	Q5W111	196 aa		27.75	■■■□□ 2.03
LYSMD4-208	ENST00000493256	ZNF70	Q9UC06	446 aa	Predicted RBP	27.75	■■■□□ 2.03
LYSMD4-208	ENST00000493256	EYA2	O00167	538 aa		27.74	■■■□□ 2.03
LYSMD4-208	ENST00000493256	PPP1R12B	O60237	982 aa	Predicted RBP	27.74	■■■□□ 2.03
LYSMD4-208	ENST00000493256	FRAT2	O75474	233 aa	Predicted RBP	27.74	■■■□□ 2.03
LYSMD4-208	ENST00000493256	FGFR2	P21802	821 aa		27.74	■■■□□ 2.03
LYSMD4-208	ENST00000493256	PUM3	Q15397	648 aa	Known RBP	27.74	■■■□□ 2.03
LYSMD4-208	ENST00000493256	DZIP1L	Q8IYY4	767 aa	Known RBP	27.74	■■■□□ 2.03
LYSMD4-208	ENST00000493256	TDRD3	Q9H7E2	651 aa	Known RBP	27.74	■■■□□ 2.03
LYSMD4-208	ENST00000493256	KIF16B	Q96L93	1317 aa		27.73	■■■□□ 2.03
LYSMD4-208	ENST00000493256	TBC1D8	O95759	1140 aa		27.73	■■■□□ 2.03
LYSMD4-208	ENST00000493256	UBTFL1	P0CB47	393 aa	Predicted RBP	27.73	■■■□□ 2.03
LYSMD4-208	ENST00000493256	CRK	P46108	304 aa		27.73	■■■□□ 2.03
LYSMD4-208	ENST00000493256	TBC1D22A	Q8WUA7	517 aa		27.73	■■■□□ 2.03
LYSMD4-208	ENST00000493256	CLMN	Q96JQ2	1002 aa		27.73	■■■□□ 2.03
LYSMD4-208	ENST00000493256	IFIT1	P09914	478 aa	Known RBP	27.72	■■■□□ 2.03
LYSMD4-208	ENST00000493256	SREBF2	Q12772	1141 aa		27.72	■■■□□ 2.03
LYSMD4-208	ENST00000493256	SLC10A4	Q96EP9	437 aa		27.72	■■■□□ 2.03
LYSMD4-208	ENST00000493256	API5	Q9BZZ5	524 aa	Known RBP	27.72	■■■□□ 2.03
LYSMD4-208	ENST00000493256	TNFAIP1	Q13829	316 aa		27.71	■■■□□ 2.03
LYSMD4-208	ENST00000493256	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	27.71	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms