RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 FBXO3Q9UK99 471 aa16.53■□□□□ 0.24
MSH6-208ENST00000493177 TRAF5O00463 557 aa16.52■□□□□ 0.24
MSH6-208ENST00000493177 HIRAP54198 1017 aaPredicted RBP16.52■□□□□ 0.24
MSH6-208ENST00000493177 METTL24Q5JXM2 366 aa16.52■□□□□ 0.24
MSH6-208ENST00000493177 CDC37L1Q7L3B6 337 aa16.52■□□□□ 0.24
MSH6-208ENST00000493177 ZNF804AQ7Z570 1209 aa16.52■□□□□ 0.24
MSH6-208ENST00000493177 KIF1BPQ96EK5 621 aa16.52■□□□□ 0.24
MSH6-208ENST00000493177 GLIS2Q9BZE0 524 aaPredicted RBP16.52■□□□□ 0.24
MSH6-208ENST00000493177 LRRCC1Q9C099 1032 aa16.52■□□□□ 0.24
MSH6-208ENST00000493177 MYO3BQ8WXR4 1341 aa16.51■□□□□ 0.23
MSH6-208ENST00000493177 SMARCA5O60264 1052 aaPredicted RBP16.51■□□□□ 0.23
MSH6-208ENST00000493177 USP17L8P0C7I0 530 aa16.51■□□□□ 0.23
MSH6-208ENST00000493177 KLRK1P26718 216 aa16.51■□□□□ 0.23
MSH6-208ENST00000493177 TXNRD3Q86VQ6 643 aa16.51■□□□□ 0.23
MSH6-208ENST00000493177 OGFOD1Q8N543 542 aa16.51■□□□□ 0.23
MSH6-208ENST00000493177 RHPN1Q8TCX5 695 aa16.51■□□□□ 0.23
MSH6-208ENST00000493177 CNTNAP1P78357 1384 aa16.51■□□□□ 0.23
MSH6-208ENST00000493177 MROH5Q6ZUA9 1318 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 CELF2O95319 508 aaKnown RBP16.5■□□□□ 0.23
MSH6-208ENST00000493177 FMR1Q06787 632 aaKnown RBP eCLIP16.5■□□□□ 0.231e-9■■■■□ 24.6
MSH6-208ENST00000493177 TFCP2Q12800 502 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 GRM1Q13255 1194 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 DEFB115Q30KQ5 88 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 ATG9AQ7Z3C6 839 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 JMYQ8N9B5 988 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 IL1RAPL2Q9NP60 686 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 CEP126Q9P2H0 1117 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 RIPOR2Q9Y4F9 1068 aa16.5■□□□□ 0.23
MSH6-208ENST00000493177 ZNF646O15015 1829 aaPredicted RBP16.49■□□□□ 0.23
MSH6-208ENST00000493177 SNAP23O00161 211 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 SASH1O94885 1247 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 GTF2IP78347 998 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 STRIP1Q5VSL9 837 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 TTLL5Q6EMB2 1281 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 USP48Q86UV5 1035 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 GGA3Q9NZ52 723 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 HDAC9Q9UKV0 1011 aa16.49■□□□□ 0.23
MSH6-208ENST00000493177 EGFRP00533 1210 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 NUCB1Q02818 461 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 KRT26Q7Z3Y9 468 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 CHD1LQ86WJ1 897 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 SULF1Q8IWU6 871 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 LNPKQ9C0E8 428 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 CD209Q9NNX6 404 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 MYOZ2Q9NPC6 264 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 PGAP2Q9UHJ9 254 aa16.48■□□□□ 0.23
MSH6-208ENST00000493177 MYH13Q9UKX3 1938 aa16.47■□□□□ 0.23
MSH6-208ENST00000493177 ZNF609O15014 1411 aa16.47■□□□□ 0.23
MSH6-208ENST00000493177 DACT2Q5SW24 774 aa16.47■□□□□ 0.23
MSH6-208ENST00000493177 VPS37DQ86XT2 251 aa16.47■□□□□ 0.23
MSH6-208ENST00000493177 CLASRPQ8N2M8 674 aaKnown RBP16.47■□□□□ 0.23
MSH6-208ENST00000493177 MXD3Q9BW11 206 aa16.47■□□□□ 0.23
MSH6-208ENST00000493177 HSPA1AP0DMV8 641 aaKnown RBP16.46■□□□□ 0.23
MSH6-208ENST00000493177 HSPA1BP0DMV9 641 aaKnown RBP16.46■□□□□ 0.23
MSH6-208ENST00000493177 ECE1P42892 770 aa16.46■□□□□ 0.23
MSH6-208ENST00000493177 VEGFBP49765 207 aa16.46■□□□□ 0.23
MSH6-208ENST00000493177 ZNF280AP59817 542 aaPredicted RBP16.46■□□□□ 0.23
MSH6-208ENST00000493177 UBE4AQ14139 1066 aa16.46■□□□□ 0.23
MSH6-208ENST00000493177 SCARF1Q14162 830 aa16.46■□□□□ 0.23
MSH6-208ENST00000493177 ANGEL2Q5VTE6 544 aaKnown RBP16.46■□□□□ 0.23
MSH6-208ENST00000493177 AACSQ86V21 672 aa16.46■□□□□ 0.23
MSH6-208ENST00000493177 AKAP2Q9Y2D5 859 aa16.46■□□□□ 0.23
MSH6-208ENST00000493177 RASSF10A6NK89 507 aa16.45■□□□□ 0.22
MSH6-208ENST00000493177 ADM5C9JUS6 153 aa16.45■□□□□ 0.22
MSH6-208ENST00000493177 FRAT2O75474 233 aaPredicted RBP16.45■□□□□ 0.22
MSH6-208ENST00000493177 PDE8BO95263 885 aa16.45■□□□□ 0.22
MSH6-208ENST00000493177 IFIT2P09913 472 aaKnown RBP16.45■□□□□ 0.22
MSH6-208ENST00000493177 C15orf52Q6ZUT6 534 aaKnown RBP16.45■□□□□ 0.22
MSH6-208ENST00000493177 KIAA0825Q8IV33 1275 aa16.45■□□□□ 0.22
MSH6-208ENST00000493177 AIDAQ96BJ3 306 aa16.45■□□□□ 0.22
MSH6-208ENST00000493177 NEUROD6Q96NK8 337 aa16.45■□□□□ 0.22
MSH6-208ENST00000493177 F8W031 263 aaPredicted RBP16.44■□□□□ 0.22
MSH6-208ENST00000493177 PUM3Q15397 648 aaKnown RBP16.44■□□□□ 0.22
MSH6-208ENST00000493177 ATP2B3Q16720 1220 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 TNNI3KQ59H18 835 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 CST9Q5W186 159 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 GMLQ99445 158 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 CCDC8Q9H0W5 538 aaPredicted RBP16.44■□□□□ 0.22
MSH6-208ENST00000493177 JAG2Q9Y219 1238 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 TLL2Q9Y6L7 1015 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.44■□□□□ 0.22
MSH6-208ENST00000493177 FPGT-TNNI3KV9GXZ4 949 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 ECM29Q5VYK3 1845 aa16.44■□□□□ 0.22
MSH6-208ENST00000493177 WDR33Q9C0J8 1336 aaKnown RBP16.44■□□□□ 0.22
MSH6-208ENST00000493177 ARAP2Q8WZ64 1704 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 SLC5A1P13866 664 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 HIBADHP31937 336 aaKnown RBP16.43■□□□□ 0.22
MSH6-208ENST00000493177 GYG1P46976 350 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 CAVIN4Q5BKX8 364 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 CYP4F22Q6NT55 531 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 VGLL2Q8N8G2 317 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 C2orf69Q8N8R5 385 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 GPR108Q9NPR9 543 aa16.43■□□□□ 0.22
MSH6-208ENST00000493177 ASTN2O75129 1339 aaPredicted RBP16.43■□□□□ 0.22
MSH6-208ENST00000493177 A0A1B0GUL7 405 aa16.42■□□□□ 0.22
MSH6-208ENST00000493177 IFIT1P09914 478 aaKnown RBP16.42■□□□□ 0.22
MSH6-208ENST00000493177 IL1R1P14778 569 aa16.42■□□□□ 0.22
MSH6-208ENST00000493177 MMP14P50281 582 aa16.42■□□□□ 0.22
MSH6-208ENST00000493177 TIMM10P62072 90 aa16.42■□□□□ 0.22
MSH6-208ENST00000493177 GORABQ5T7V8 394 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms