RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SNAP23O00161 211 aa24.96■■□□□ 1.59
CCDC88B-208ENST00000492980 RBSNQ9H1K0 784 aa24.96■■□□□ 1.59
CCDC88B-208ENST00000492980 IDH1O75874 414 aaKnown RBP24.95■■□□□ 1.59
CCDC88B-208ENST00000492980 HAND2P61296 217 aa24.95■■□□□ 1.59
CCDC88B-208ENST00000492980 CSPP1Q1MSJ5 1256 aa24.95■■□□□ 1.59
CCDC88B-208ENST00000492980 NHSQ6T4R5 1651 aa24.95■■□□□ 1.58
CCDC88B-208ENST00000492980 PDE6AP16499 860 aa24.95■■□□□ 1.58
CCDC88B-208ENST00000492980 SMARCC2Q8TAQ2 1214 aa24.95■■□□□ 1.58
CCDC88B-208ENST00000492980 LLPHQ9BRT6 129 aaKnown RBP24.95■■□□□ 1.58
CCDC88B-208ENST00000492980 FERMT3Q86UX7 667 aa24.94■■□□□ 1.58
CCDC88B-208ENST00000492980 FBXL16Q8N461 479 aa24.94■■□□□ 1.58
CCDC88B-208ENST00000492980 SPATA5Q8NB90 893 aa24.94■■□□□ 1.58
CCDC88B-208ENST00000492980 ZNF532Q9HCE3 1301 aa24.94■■□□□ 1.58
CCDC88B-208ENST00000492980 TCRBV5S4A2TA0A5A2 114 aa24.94■■□□□ 1.58
CCDC88B-208ENST00000492980 CHST3Q7LGC8 479 aa24.94■■□□□ 1.58
CCDC88B-208ENST00000492980 WWC3Q9ULE0 1092 aa24.94■■□□□ 1.58
CCDC88B-208ENST00000492980 RASGRF1Q13972 1273 aa24.93■■□□□ 1.58
CCDC88B-208ENST00000492980 ERFEQ4G0M1 354 aa24.93■■□□□ 1.58
CCDC88B-208ENST00000492980 USP21Q9UK80 565 aa24.93■■□□□ 1.58
CCDC88B-208ENST00000492980 A0A1B0GUL6 1792 aa24.93■■□□□ 1.58
CCDC88B-208ENST00000492980 RGL2O15211 777 aa24.92■■□□□ 1.58
CCDC88B-208ENST00000492980 NSUN7Q8NE18 718 aaKnown RBP24.92■■□□□ 1.58
CCDC88B-208ENST00000492980 SPATA31A6Q5VVP1 1343 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 CTDNEP1O95476 244 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 CHRNDQ07001 517 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 MB21D2Q8IYB1 491 aaPredicted RBP24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 FAM43AQ8N2R8 423 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 ZNF274Q96GC6 653 aaPredicted RBP24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 ZNF213O14771 459 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 KRT85P78386 507 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 C3orf67Q6ZVT6 689 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 DDX11Q96FC9 970 aa24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 CDC5LQ99459 802 aaKnown RBP24.91■■□□□ 1.58
CCDC88B-208ENST00000492980 PHF14O94880 888 aa24.9■■□□□ 1.58
CCDC88B-208ENST00000492980 PDIA3P30101 505 aaKnown RBP24.9■■□□□ 1.58
CCDC88B-208ENST00000492980 EVCP57679 992 aa24.9■■□□□ 1.58
CCDC88B-208ENST00000492980 RC3H1Q5TC82 1133 aaKnown RBP24.9■■□□□ 1.58
CCDC88B-208ENST00000492980 BCL2L12Q9HB09 334 aa24.9■■□□□ 1.58
CCDC88B-208ENST00000492980 SF3B3Q15393 1217 aaKnown RBP24.89■■□□□ 1.58
CCDC88B-208ENST00000492980 FAM173BQ6P4H8 233 aa24.89■■□□□ 1.58
CCDC88B-208ENST00000492980 SMIM5Q71RC9 77 aa24.89■■□□□ 1.58
CCDC88B-208ENST00000492980 CCT2P78371 535 aaKnown RBP24.89■■□□□ 1.57
CCDC88B-208ENST00000492980 CCDC183Q5T5S1 534 aa24.89■■□□□ 1.57
CCDC88B-208ENST00000492980 NCOA7Q8NI08 942 aa24.89■■□□□ 1.57
CCDC88B-208ENST00000492980 NBPF3Q9H094 633 aa24.89■■□□□ 1.57
CCDC88B-208ENST00000492980 PTPDC1A2A3K4 754 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 MCM5P33992 734 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 BCAMP50895 628 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 TBC1D9BQ66K14 1250 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 FAM184AQ8NB25 1140 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 GPHNQ9NQX3 736 aaPredicted RBP24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 COL24A1Q17RW2 1714 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 SALL1Q9NSC2 1324 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 PRC1O43663 620 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 HMGN5P82970 282 aaKnown RBP24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 CCDC173Q0VFZ6 552 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 TTC6Q86TZ1 520 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 STRBPQ96SI9 672 aaKnown RBP24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 NCOA5Q9HCD5 579 aaKnown RBP24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 TAF1P21675 1872 aa24.88■■□□□ 1.57
CCDC88B-208ENST00000492980 RPS6KA4O75676 772 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 ANTXR2P58335 489 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 MAP3K12Q12852 859 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 RESTQ13127 1097 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 PPP1R9BQ96SB3 815 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 NARFQ9UHQ1 456 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 ELP1O95163 1332 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 WDR19Q8NEZ3 1342 aa24.87■■□□□ 1.57
CCDC88B-208ENST00000492980 TPRNQ4KMQ1 711 aa24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 BICDL1Q6ZP65 573 aa24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 MAGEB6Q8N7X4 407 aa24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 NAP1L2Q9ULW6 460 aaPredicted RBP24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 RALYLQ86SE5 291 aaKnown RBP24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 ANKRD18AQ8IVF6 992 aa24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 AIDAQ96BJ3 306 aa24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 TSPY26PQ9H489 355 aa24.86■■□□□ 1.57
CCDC88B-208ENST00000492980 H3BQV1 296 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 SLC10A5Q5PT55 438 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 IFFO2Q5TF58 517 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 ANP32BQ92688 251 aaKnown RBP24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 LY75O60449 1722 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 APPP05067 770 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 FAM182BQ5T319 152 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 TBC1D10CQ8IV04 446 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 CHMP4CQ96CF2 233 aa24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 SRP68Q9UHB9 627 aaKnown RBP24.85■■□□□ 1.57
CCDC88B-208ENST00000492980 TAF1LQ8IZX4 1826 aa24.84■■□□□ 1.57
CCDC88B-208ENST00000492980 ZMYM6O95789 1325 aa24.84■■□□□ 1.57
CCDC88B-208ENST00000492980 MYH15Q9Y2K3 1946 aa24.84■■□□□ 1.57
CCDC88B-208ENST00000492980 GNPATO15228 680 aa24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 ALX1Q15699 326 aa24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 NAA16Q6N069 864 aaPredicted RBP24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 SCAND2PQ9GZW5 306 aaPredicted RBP24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 BSDC1Q9NW68 430 aaPredicted RBP24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 CCNL1Q9UK58 526 aaPredicted RBP24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 KIF3AQ9Y496 699 aa24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 ZSCAN16Q9H4T2 348 aaPredicted RBP24.83■■□□□ 1.57
CCDC88B-208ENST00000492980 LETM1O95202 739 aaPredicted RBP24.82■■□□□ 1.56
CCDC88B-208ENST00000492980 MBD4O95243 580 aa24.82■■□□□ 1.56
CCDC88B-208ENST00000492980 ZNF804BA4D1E1 1349 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms