RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 CNKSR1Q969H4 720 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 MASTLQ96GX5 879 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 MTFR1LQ9H019 292 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 VPS33BQ9H267 617 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 GREM2Q9H772 168 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 LEMD3Q9Y2U8 911 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 ABCC12Q96J65 1359 aa8.48□□□□□ -1.05
SYNE1-229ENST00000490866 SEMA3EO15041 775 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 SASH1O94885 1247 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 MMP10P09238 476 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 SLC5A1P13866 664 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 ATP5JP18859 108 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 RGS3P49796 1198 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 TGFB2P61812 414 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 MMRN1Q13201 1228 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 GRAPQ13588 217 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 TNNI3KQ59H18 835 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 STYK1Q6J9G0 422 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 TYW1BQ6NUM6 668 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 POTEEQ6S8J3 1075 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 AACSQ86V21 672 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 NUTM1Q86Y26 1132 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 GRAPLQ8TC17 118 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-229ENST00000490866 EVI5LQ96CN4 794 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 SLC4A5Q9BY07 1137 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 FPGT-TNNI3KV9GXZ4 949 aa8.47□□□□□ -1.05
SYNE1-229ENST00000490866 FAM177BA6PVY3 158 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 PTPREP23469 700 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 TTC22Q5TAA0 569 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 ZSCAN25Q6NSZ9 544 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 ATG9AQ7Z3C6 839 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 DEFB132Q7Z7B7 95 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 SP8Q8IXZ3 490 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 NEUROD6Q96NK8 337 aa8.46□□□□□ -1.06
SYNE1-229ENST00000490866 APBB1O00213 710 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 ZFYP08048 801 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-229ENST00000490866 SRGNP10124 158 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 ATP2B4P23634 1241 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 MFAP1P55081 439 aaKnown RBP8.45□□□□□ -1.06
SYNE1-229ENST00000490866 TFCP2Q12800 502 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 SUPT20HQ8NEM7 779 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 JARID2Q92833 1246 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-229ENST00000490866 SIL1Q9H173 461 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 PODXL2Q9NZ53 605 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 PCDHGA10Q9Y5H3 936 aa8.45□□□□□ -1.06
SYNE1-229ENST00000490866 C4AP0C0L4 1744 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 COL24A1Q17RW2 1714 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 LAMB2P55268 1798 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 A0A1B0GUL7 405 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 CDC45O75419 566 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 REC8O95072 547 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 KCNJ4P48050 445 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 MMP14P50281 582 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 ATP2B3Q16720 1220 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 C15orf52Q6ZUT6 534 aaKnown RBP8.44□□□□□ -1.06
SYNE1-229ENST00000490866 VPS37DQ86XT2 251 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 ZGPATQ8N5A5 531 aaKnown RBP8.44□□□□□ -1.06
SYNE1-229ENST00000490866 EAF2Q96CJ1 260 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-229ENST00000490866 EYA3Q99504 573 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.44□□□□□ -1.06
SYNE1-229ENST00000490866 IL1RAPL2Q9NP60 686 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 MINPP1Q9UNW1 487 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 PA2G4Q9UQ80 394 aaKnown RBP8.44□□□□□ -1.06
SYNE1-229ENST00000490866 ATP6V0A2Q9Y487 856 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 CD2APQ9Y5K6 639 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 XDHP47989 1333 aa8.44□□□□□ -1.06
SYNE1-229ENST00000490866 TRIM6-TRIM34B2RNG4 842 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 CHRNDQ07001 517 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 DDR1Q08345 913 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 LRRC24Q50LG9 513 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 AMIGO3Q86WK7 504 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 CERS3Q8IU89 383 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 RTKN2Q8IZC4 609 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 SYNE4Q8N205 404 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 HAUS7Q99871 368 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 BACH2Q9BYV9 841 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 ANKIB1Q9P2G1 1089 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 PDS5AQ29RF7 1337 aaKnown RBP8.43□□□□□ -1.06
SYNE1-229ENST00000490866 SALL3Q9BXA9 1300 aa8.43□□□□□ -1.06
SYNE1-229ENST00000490866 SMARCA5O60264 1052 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-229ENST00000490866 FGFR2P21802 821 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 TIMM10P62072 90 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 TTC39AQ5SRH9 613 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 SPTY2D1Q68D10 685 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-229ENST00000490866 ADGRD1Q6QNK2 874 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 KIAA1211Q6ZU35 1233 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 VGLL2Q8N8G2 317 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 KLHDC4Q8TBB5 520 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 XAGE2Q96GT9 111 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 ZNF594Q96JF6 807 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-229ENST00000490866 KCNK17Q96T54 332 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 DENND2AQ9ULE3 1009 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 RFX7Q2KHR2 1363 aa8.42□□□□□ -1.06
SYNE1-229ENST00000490866 NRXN2Q9P2S2 1712 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 ZNF804BA4D1E1 1349 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 HIBADHP31937 336 aaKnown RBP8.41□□□□□ -1.06
SYNE1-229ENST00000490866 PSEN2P49810 448 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 ZNF804AQ7Z570 1209 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 C2CD5Q86YS7 1000 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 SLF2Q8IX21 1173 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms