RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 MAP4K3Q8IVH8 894 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 DTWD1Q8N5C7 304 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 C12orf49Q9H741 205 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 FAM8A1Q9UBU6 413 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 AKAP2Q9Y2D5 859 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 SORBS3O60504 671 aa8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 ZNF16P17020 682 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 BAG6P46379 1132 aa8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 COL9A3Q14050 684 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 SLC7A3Q8WY07 619 aa8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 CLEC4MQ9H2X3 399 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 SRA1Q9HD15 236 aaKnown RBP8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 ABCB6Q9NP58 842 aa8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 VTI1BQ9UEU0 232 aa8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 SOX13Q9UN79 622 aa8.3□□□□□ -1.08
HMGB1P38-201ENST00000490557 A0A0A0MRY4 1105 aa8.29□□□□□ -1.08
HMGB1P38-201ENST00000490557 DAB2P98082 770 aa8.29□□□□□ -1.08
HMGB1P38-201ENST00000490557 TMC4Q7Z404 712 aa8.29□□□□□ -1.08
HMGB1P38-201ENST00000490557 DDX54Q8TDD1 881 aaKnown RBP8.29□□□□□ -1.08
HMGB1P38-201ENST00000490557 FAM161BQ96MY7 647 aa8.29□□□□□ -1.08
HMGB1P38-201ENST00000490557 OSBPL7Q9BZF2 842 aa8.29□□□□□ -1.08
HMGB1P38-201ENST00000490557 AK5Q9Y6K8 562 aa8.29□□□□□ -1.08
HMGB1P38-201ENST00000490557 RBM47A0AV96 593 aaKnown RBP8.28□□□□□ -1.08
HMGB1P38-201ENST00000490557 FAM229AH3BQW9 127 aa8.28□□□□□ -1.08
HMGB1P38-201ENST00000490557 USP17L7P0C7H9 530 aa8.28□□□□□ -1.08
HMGB1P38-201ENST00000490557 PIP4K2BP78356 416 aa8.28□□□□□ -1.08
HMGB1P38-201ENST00000490557 PTPN12Q05209 780 aaKnown RBP8.28□□□□□ -1.08
HMGB1P38-201ENST00000490557 PCDH1Q08174 1060 aa8.28□□□□□ -1.08
HMGB1P38-201ENST00000490557 GLIS3Q8NEA6 775 aa8.28□□□□□ -1.08
HMGB1P38-201ENST00000490557 FSCN2O14926 492 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 ITPKAP23677 461 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 ADAMTSL4Q6UY14 1074 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 VN1R5Q7Z5H4 357 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 FMR1NBQ8N0W7 255 aaPredicted RBP8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 WNT8BQ93098 351 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 CARD10Q9BWT7 1032 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 ZNF576Q9H609 170 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 SEC31BQ9NQW1 1179 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 RNF19AQ9NV58 838 aa8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 GPN3Q9UHW5 284 aaPredicted RBP8.27□□□□□ -1.09
HMGB1P38-201ENST00000490557 EIF4EBP3O60516 100 aaPredicted RBP8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 APBA3O96018 575 aa8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 SPATA31C1P0DKV0 1188 aa8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 ELNP15502 786 aa8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 C19orf57Q0VDD7 668 aa8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 RPS26P11Q5JNZ5 115 aaPredicted RBP8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 ALYREFQ86V81 257 aaKnown RBP8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 FBXO11Q86XK2 927 aa8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 KLHL23Q8NBE8 558 aa8.26□□□□□ -1.09
HMGB1P38-201ENST00000490557 ESRRAP11474 423 aaPredicted RBP8.25□□□□□ -1.09
HMGB1P38-201ENST00000490557 GSTM4Q03013 218 aa8.25□□□□□ -1.09
HMGB1P38-201ENST00000490557 PPP2R3AQ06190 1150 aa8.25□□□□□ -1.09
HMGB1P38-201ENST00000490557 OSGEPQ9NPF4 335 aa8.25□□□□□ -1.09
HMGB1P38-201ENST00000490557 TTF2Q9UNY4 1162 aaKnown RBP8.25□□□□□ -1.09
HMGB1P38-201ENST00000490557 SETDB1Q15047 1291 aa8.24□□□□□ -1.09
HMGB1P38-201ENST00000490557 NACC1Q96RE7 527 aa8.24□□□□□ -1.09
HMGB1P38-201ENST00000490557 CEP44Q9C0F1 390 aa8.24□□□□□ -1.09
HMGB1P38-201ENST00000490557 PPM1HQ9ULR3 514 aa8.24□□□□□ -1.09
HMGB1P38-201ENST00000490557 SOX1O00570 391 aaPredicted RBP8.23□□□□□ -1.09
HMGB1P38-201ENST00000490557 DEAF1O75398 565 aaPredicted RBP8.23□□□□□ -1.09
HMGB1P38-201ENST00000490557 CD68P34810 354 aaPredicted RBP8.23□□□□□ -1.09
HMGB1P38-201ENST00000490557 SUZ12Q15022 739 aaKnown RBP8.23□□□□□ -1.09
HMGB1P38-201ENST00000490557 TPTE2Q6XPS3 522 aa8.23□□□□□ -1.09
HMGB1P38-201ENST00000490557 USP21Q9UK80 565 aa8.23□□□□□ -1.09
HMGB1P38-201ENST00000490557 B3GALT4O96024 378 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 COL8A1P27658 744 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 ZNF157P51786 506 aaPredicted RBP8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 NLRP12P59046 1061 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 GRIK4Q16099 956 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 ZNF423Q2M1K9 1284 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 C3orf58Q8NDZ4 430 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 CRELD1Q96HD1 420 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 SOX17Q9H6I2 414 aaPredicted RBP8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 TMEM39AQ9NV64 488 aa8.22□□□□□ -1.09
HMGB1P38-201ENST00000490557 RBM25P49756 843 aaKnown RBP8.21□□□□□ -1.1
HMGB1P38-201ENST00000490557 IGF2-ASQ6U949 168 aa8.21□□□□□ -1.1
HMGB1P38-201ENST00000490557 GALNT11Q8NCW6 608 aa8.21□□□□□ -1.1
HMGB1P38-201ENST00000490557 KLHDC7BQ96G42 594 aa8.21□□□□□ -1.1
HMGB1P38-201ENST00000490557 USP26Q9BXU7 913 aa8.21□□□□□ -1.1
HMGB1P38-201ENST00000490557 SAMM50Q9Y512 469 aa8.21□□□□□ -1.1
HMGB1P38-201ENST00000490557 FBXO24O75426 580 aa8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 CYP11A1P05108 521 aa8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 TAF1CQ15572 869 aaPredicted RBP8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 DUOXA2Q1HG44 320 aa8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 ILDR2Q71H61 639 aa8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 MRRFQ96E11 262 aaKnown RBP8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 CORO1BQ9BR76 489 aa8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 MRPL18Q9H0U6 180 aaKnown RBP8.2□□□□□ -1.1
HMGB1P38-201ENST00000490557 C9orf172C9J069 976 aa8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 DLL1O00548 723 aa8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 HNRNPUQ00839 825 aaKnown RBP eCLIP8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 NRG1Q02297 640 aaPredicted RBP8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 FAAP100Q0VG06 881 aa8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 AP3B2Q13367 1082 aa8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 CCDC85BQ15834 202 aaPredicted RBP8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 HGSNATQ68CP4 663 aa8.19□□□□□ -1.1
HMGB1P38-201ENST00000490557 RASSF7Q02833 373 aa8.18□□□□□ -1.1
HMGB1P38-201ENST00000490557 MRPL58Q14197 206 aaKnown RBP8.18□□□□□ -1.1
HMGB1P38-201ENST00000490557 TSNAXIP1Q2TAA8 658 aa8.18□□□□□ -1.1
HMGB1P38-201ENST00000490557 FOXD4L6Q3SYB3 417 aaPredicted RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms