RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ABT1Q9ULW3 272 aaKnown RBP22.62■■□□□ 1.21
COL9A3-214ENST00000490398 FAM205AQ6ZU69 1335 aa22.61■■□□□ 1.21
COL9A3-214ENST00000490398 PNMA6EA0A0J9YXQ4 647 aa22.61■■□□□ 1.21
COL9A3-214ENST00000490398 VEGFBP49765 207 aa22.61■■□□□ 1.21
COL9A3-214ENST00000490398 MTX1Q13505 466 aa22.61■■□□□ 1.21
COL9A3-214ENST00000490398 GRIK5Q16478 980 aa22.61■■□□□ 1.21
COL9A3-214ENST00000490398 DCPSQ96C86 337 aaKnown RBP22.61■■□□□ 1.21
COL9A3-214ENST00000490398 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.61■■□□□ 1.21
COL9A3-214ENST00000490398 AOX1Q06278 1338 aa22.6■■□□□ 1.21
COL9A3-214ENST00000490398 RASSF10A6NK89 507 aa22.6■■□□□ 1.21
COL9A3-214ENST00000490398 WNT10BO00744 389 aa22.6■■□□□ 1.21
COL9A3-214ENST00000490398 CIAO1O76071 339 aa22.6■■□□□ 1.21
COL9A3-214ENST00000490398 PUM3Q15397 648 aaKnown RBP22.6■■□□□ 1.21
COL9A3-214ENST00000490398 FTSJ3Q8IY81 847 aaKnown RBP22.6■■□□□ 1.21
COL9A3-214ENST00000490398 HDAC5Q9UQL6 1122 aa22.6■■□□□ 1.21
COL9A3-214ENST00000490398 ITPRIPQ8IWB1 547 aa22.59■■□□□ 1.21
COL9A3-214ENST00000490398 OGFOD1Q8N543 542 aa22.59■■□□□ 1.21
COL9A3-214ENST00000490398 ZBED3Q96IU2 234 aaPredicted RBP22.59■■□□□ 1.21
COL9A3-214ENST00000490398 ZBTB7BO15156 539 aaPredicted RBP22.58■■□□□ 1.21
COL9A3-214ENST00000490398 IL15P40933 162 aaPredicted RBP22.58■■□□□ 1.21
COL9A3-214ENST00000490398 DEFB115Q30KQ5 88 aa22.58■■□□□ 1.21
COL9A3-214ENST00000490398 TLL2Q9Y6L7 1015 aa22.58■■□□□ 1.21
COL9A3-214ENST00000490398 FKBP1AP62942 108 aaKnown RBP22.57■■□□□ 1.2
COL9A3-214ENST00000490398 CHAF1AQ13111 956 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-214ENST00000490398 PRAMEF18Q5VWM3 479 aa22.57■■□□□ 1.2
COL9A3-214ENST00000490398 LPIN2Q92539 896 aa22.57■■□□□ 1.2
COL9A3-214ENST00000490398 CEP126Q9P2H0 1117 aa22.57■■□□□ 1.2
COL9A3-214ENST00000490398 FBXO3Q9UK99 471 aa22.57■■□□□ 1.2
COL9A3-214ENST00000490398 POLR2AP24928 1970 aaKnown RBP22.57■■□□□ 1.2
COL9A3-214ENST00000490398 TRPM7Q96QT4 1865 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 IFIT1P09914 478 aaKnown RBP22.56■■□□□ 1.2
COL9A3-214ENST00000490398 ADORA1P30542 326 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 ATP2B3Q16720 1220 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 MFSD14BQ5SR56 506 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 SAPCD2Q86UD0 394 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 VPS37DQ86XT2 251 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 SULF1Q8IWU6 871 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 CDCA5Q96FF9 252 aa22.56■■□□□ 1.2
COL9A3-214ENST00000490398 SLC5A1P13866 664 aa22.55■■□□□ 1.2
COL9A3-214ENST00000490398 CAVIN4Q5BKX8 364 aa22.55■■□□□ 1.2
COL9A3-214ENST00000490398 CYP4F22Q6NT55 531 aa22.55■■□□□ 1.2
COL9A3-214ENST00000490398 RCAN3Q9UKA8 241 aa22.55■■□□□ 1.2
COL9A3-214ENST00000490398 HDAC9Q9UKV0 1011 aa22.55■■□□□ 1.2
COL9A3-214ENST00000490398 COL1A1P02452 1464 aaPredicted RBP22.54■■□□□ 1.2
COL9A3-214ENST00000490398 TFCP2Q12800 502 aa22.54■■□□□ 1.2
COL9A3-214ENST00000490398 CFAP100Q494V2 611 aa22.54■■□□□ 1.2
COL9A3-214ENST00000490398 PRMT6Q96LA8 375 aaPredicted RBP22.54■■□□□ 1.2
COL9A3-214ENST00000490398 PITPNM2Q9BZ72 1349 aa22.54■■□□□ 1.2
COL9A3-214ENST00000490398 TIMM10P62072 90 aa22.53■■□□□ 1.2
COL9A3-214ENST00000490398 WDR33Q9C0J8 1336 aaKnown RBP22.53■■□□□ 1.2
COL9A3-214ENST00000490398 ATP8B2P98198 1209 aa22.52■■□□□ 1.2
COL9A3-214ENST00000490398 GRM1Q13255 1194 aa22.52■■□□□ 1.2
COL9A3-214ENST00000490398 POLA2Q14181 598 aa22.52■■□□□ 1.2
COL9A3-214ENST00000490398 DLGAP5Q15398 846 aa22.52■■□□□ 1.2
COL9A3-214ENST00000490398 MTMR14Q8NCE2 650 aa22.52■■□□□ 1.2
COL9A3-214ENST00000490398 TTF2Q9UNY4 1162 aaKnown RBP22.52■■□□□ 1.2
COL9A3-214ENST00000490398 FRAT2O75474 233 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-214ENST00000490398 HSPA1AP0DMV8 641 aaKnown RBP22.51■■□□□ 1.19
COL9A3-214ENST00000490398 HSPA1BP0DMV9 641 aaKnown RBP22.51■■□□□ 1.19
COL9A3-214ENST00000490398 PHKA1P46020 1223 aa22.51■■□□□ 1.19
COL9A3-214ENST00000490398 PAXIP1Q6ZW49 1069 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-214ENST00000490398 CAPNS2Q96L46 248 aa22.51■■□□□ 1.19
COL9A3-214ENST00000490398 CLRN2A0PK11 232 aa22.5■■□□□ 1.19
COL9A3-214ENST00000490398 SPDYE2BA6NHP3 402 aa22.5■■□□□ 1.19
COL9A3-214ENST00000490398 SPDYE6P0CI01 402 aa22.5■■□□□ 1.19
COL9A3-214ENST00000490398 MMP14P50281 582 aa22.5■■□□□ 1.19
COL9A3-214ENST00000490398 C20orf194Q5TEA3 1177 aa22.5■■□□□ 1.19
COL9A3-214ENST00000490398 MOB2Q70IA6 237 aa22.5■■□□□ 1.19
COL9A3-214ENST00000490398 SSH3Q8TE77 659 aa22.5■■□□□ 1.19
COL9A3-214ENST00000490398 GBA2Q9HCG7 927 aaPredicted RBP22.5■■□□□ 1.19
COL9A3-214ENST00000490398 AOC2O75106 756 aa22.49■■□□□ 1.19
COL9A3-214ENST00000490398 HUNKP57058 714 aa22.49■■□□□ 1.19
COL9A3-214ENST00000490398 COG6Q9Y2V7 657 aa22.49■■□□□ 1.19
COL9A3-214ENST00000490398 A0A1B0GUL7 405 aa22.48■■□□□ 1.19
COL9A3-214ENST00000490398 RBM5P52756 815 aaKnown RBP eCLIP22.48■■□□□ 1.19
COL9A3-214ENST00000490398 CRKP46108 304 aa22.47■■□□□ 1.19
COL9A3-214ENST00000490398 CCDC102BQ68D86 513 aa22.47■■□□□ 1.19
COL9A3-214ENST00000490398 CEP85Q6P2H3 762 aa22.47■■□□□ 1.19
COL9A3-214ENST00000490398 XAGE2Q96GT9 111 aa22.47■■□□□ 1.19
COL9A3-214ENST00000490398 YTHDC1Q96MU7 727 aaKnown RBP22.47■■□□□ 1.19
COL9A3-214ENST00000490398 ZIC5Q96T25 663 aa22.47■■□□□ 1.19
COL9A3-214ENST00000490398 ARAP2Q8WZ64 1704 aa22.46■■□□□ 1.19
COL9A3-214ENST00000490398 G3BP1Q13283 466 aaKnown RBP eCLIP22.46■■□□□ 1.19
COL9A3-214ENST00000490398 MVPQ14764 893 aaKnown RBP22.46■■□□□ 1.19
COL9A3-214ENST00000490398 C2orf69Q8N8R5 385 aa22.46■■□□□ 1.19
COL9A3-214ENST00000490398 SERPINA10Q9UK55 444 aa22.46■■□□□ 1.19
COL9A3-214ENST00000490398 FZD1Q9UP38 647 aa22.46■■□□□ 1.19
COL9A3-214ENST00000490398 APOBEC3FQ8IUX4 373 aaKnown RBP22.45■■□□□ 1.18
COL9A3-214ENST00000490398 TBC1D22AQ8WUA7 517 aa22.45■■□□□ 1.18
COL9A3-214ENST00000490398 HHIPL1Q96JK4 782 aa22.45■■□□□ 1.18
COL9A3-214ENST00000490398 TDRD3Q9H7E2 651 aaKnown RBP22.45■■□□□ 1.18
COL9A3-214ENST00000490398 VEZTQ9HBM0 779 aa22.45■■□□□ 1.18
COL9A3-214ENST00000490398 NEUROD6Q96NK8 337 aa22.44■■□□□ 1.18
COL9A3-214ENST00000490398 DEFB129Q9H1M3 183 aa22.44■■□□□ 1.18
COL9A3-214ENST00000490398 FOXN1O15353 648 aa22.43■■□□□ 1.18
COL9A3-214ENST00000490398 SURF6O75683 361 aaKnown RBP22.43■■□□□ 1.18
COL9A3-214ENST00000490398 ECE1P42892 770 aa22.43■■□□□ 1.18
COL9A3-214ENST00000490398 RASGRF1Q13972 1273 aa22.43■■□□□ 1.18
COL9A3-214ENST00000490398 WBP1LQ9NX94 342 aa22.43■■□□□ 1.18
COL9A3-214ENST00000490398 ZNF70Q9UC06 446 aaPredicted RBP22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms