RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 LAMB1P07942 1786 aa20.82■□□□□ 0.92
USP48-210ENST00000489108 MYBBP1AQ9BQG0 1328 aaKnown RBP20.81■□□□□ 0.92
USP48-210ENST00000489108 CLRN2A0PK11 232 aa20.81■□□□□ 0.92
USP48-210ENST00000489108 UNCXA6NJT0 531 aa20.81■□□□□ 0.92
USP48-210ENST00000489108 H7C1W4 665 aa20.81■□□□□ 0.92
USP48-210ENST00000489108 USP2O75604 605 aaPredicted RBP20.81■□□□□ 0.92
USP48-210ENST00000489108 PRMT6Q96LA8 375 aaPredicted RBP20.81■□□□□ 0.92
USP48-210ENST00000489108 TMEM106CQ9BVX2 250 aa20.81■□□□□ 0.92
USP48-210ENST00000489108 COLQQ9Y215 455 aaPredicted RBP20.81■□□□□ 0.92
USP48-210ENST00000489108 PPP2R3BQ9Y5P8 575 aa20.81■□□□□ 0.92
USP48-210ENST00000489108 F8W031 263 aaPredicted RBP20.8■□□□□ 0.92
USP48-210ENST00000489108 ITGA6P23229 1130 aa20.8■□□□□ 0.92
USP48-210ENST00000489108 KCNJ4P48050 445 aa20.8■□□□□ 0.92
USP48-210ENST00000489108 IREB2P48200 963 aaKnown RBP20.8■□□□□ 0.92
USP48-210ENST00000489108 NEXNQ0ZGT2 675 aa20.8■□□□□ 0.92
USP48-210ENST00000489108 UBE3BQ7Z3V4 1068 aa20.8■□□□□ 0.92
USP48-210ENST00000489108 MPHOSPH8Q99549 860 aa20.8■□□□□ 0.92
USP48-210ENST00000489108 TESPA1A2RU30 521 aaPredicted RBP20.79■□□□□ 0.92
USP48-210ENST00000489108 NEURL1BA8MQ27 555 aa20.79■□□□□ 0.92
USP48-210ENST00000489108 SNAP23O00161 211 aa20.79■□□□□ 0.92
USP48-210ENST00000489108 CFAP100Q494V2 611 aa20.79■□□□□ 0.92
USP48-210ENST00000489108 TSPYL6Q8N831 410 aa20.79■□□□□ 0.92
USP48-210ENST00000489108 VEZTQ9HBM0 779 aa20.79■□□□□ 0.92
USP48-210ENST00000489108 AOX1Q06278 1338 aa20.78■□□□□ 0.92
USP48-210ENST00000489108 ECM29Q5VYK3 1845 aa20.78■□□□□ 0.92
USP48-210ENST00000489108 MYO1BO43795 1136 aa20.78■□□□□ 0.92
USP48-210ENST00000489108 CHRNDQ07001 517 aa20.78■□□□□ 0.92
USP48-210ENST00000489108 ANKRD13AQ8IZ07 590 aa20.78■□□□□ 0.92
USP48-210ENST00000489108 ZNF333Q96JL9 665 aa20.78■□□□□ 0.92
USP48-210ENST00000489108 SPDYE2BA6NHP3 402 aa20.77■□□□□ 0.92
USP48-210ENST00000489108 APAF1O14727 1248 aa20.77■□□□□ 0.92
USP48-210ENST00000489108 SPDYE6P0CI01 402 aa20.77■□□□□ 0.92
USP48-210ENST00000489108 CHMP4AQ9BY43 222 aa20.77■□□□□ 0.92
USP48-210ENST00000489108 TAF5LO75529 589 aa20.76■□□□□ 0.91
USP48-210ENST00000489108 CALD1Q05682 793 aaKnown RBP20.76■□□□□ 0.91
USP48-210ENST00000489108 RASA3Q14644 834 aa20.76■□□□□ 0.91
USP48-210ENST00000489108 HELBQ8NG08 1087 aaPredicted RBP20.76■□□□□ 0.91
USP48-210ENST00000489108 PLA2G12BQ9BX93 195 aa20.76■□□□□ 0.91
USP48-210ENST00000489108 ELP3Q9H9T3 547 aa20.76■□□□□ 0.91
USP48-210ENST00000489108 IRS2Q9Y4H2 1338 aa20.76■□□□□ 0.91
USP48-210ENST00000489108 CSF1RP07333 972 aa20.75■□□□□ 0.91
USP48-210ENST00000489108 SLC4A8Q2Y0W8 1093 aa20.75■□□□□ 0.91
USP48-210ENST00000489108 NBPF11Q86T75 865 aa20.75■□□□□ 0.91
USP48-210ENST00000489108 OPTNQ96CV9 577 aa20.75■□□□□ 0.91
USP48-210ENST00000489108 MS4A4AQ96JQ5 239 aa20.75■□□□□ 0.91
USP48-210ENST00000489108 PTCH2Q9Y6C5 1203 aa20.75■□□□□ 0.91
USP48-210ENST00000489108 RBM5P52756 815 aaKnown RBP eCLIP20.74■□□□□ 0.91
USP48-210ENST00000489108 SLC9C1Q4G0N8 1177 aa20.74■□□□□ 0.91
USP48-210ENST00000489108 G2E3Q7L622 706 aa20.74■□□□□ 0.91
USP48-210ENST00000489108 JAG2Q9Y219 1238 aa20.74■□□□□ 0.91
USP48-210ENST00000489108 MYCP01106 439 aaPredicted RBP20.73■□□□□ 0.91
USP48-210ENST00000489108 IL1R1P14778 569 aa20.73■□□□□ 0.91
USP48-210ENST00000489108 CASP7P55210 303 aa20.73■□□□□ 0.91
USP48-210ENST00000489108 GCKRQ14397 625 aa20.73■□□□□ 0.91
USP48-210ENST00000489108 C15orf52Q6ZUT6 534 aaKnown RBP20.73■□□□□ 0.91
USP48-210ENST00000489108 CNKSR2Q8WXI2 1034 aa20.73■□□□□ 0.91
USP48-210ENST00000489108 H0YGN5 161 aa20.72■□□□□ 0.91
USP48-210ENST00000489108 FKBP1AP62942 108 aaKnown RBP20.72■□□□□ 0.91
USP48-210ENST00000489108 ARHGEF6Q15052 776 aa20.72■□□□□ 0.91
USP48-210ENST00000489108 TAF1CQ15572 869 aaPredicted RBP20.72■□□□□ 0.91
USP48-210ENST00000489108 BRI3BPQ8WY22 251 aa20.72■□□□□ 0.91
USP48-210ENST00000489108 STK31Q9BXU1 1019 aa20.72■□□□□ 0.91
USP48-210ENST00000489108 ZFYVE28Q9HCC9 887 aa20.72■□□□□ 0.91
USP48-210ENST00000489108 ANKRD18BA2A2Z9 1011 aa20.71■□□□□ 0.91
USP48-210ENST00000489108 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.71■□□□□ 0.91
USP48-210ENST00000489108 ZNF804AQ7Z570 1209 aa20.71■□□□□ 0.91
USP48-210ENST00000489108 OTUD5Q96G74 571 aa20.71■□□□□ 0.91
USP48-210ENST00000489108 OTOFQ9HC10 1997 aa20.7■□□□□ 0.9
USP48-210ENST00000489108 CCL15-CCL14A0A0B4J2E2 113 aa20.7■□□□□ 0.9
USP48-210ENST00000489108 DDX10Q13206 875 aaKnown RBP20.7■□□□□ 0.9
USP48-210ENST00000489108 CCL15Q16663 113 aa20.7■□□□□ 0.9
USP48-210ENST00000489108 ZNF70Q9UC06 446 aaPredicted RBP20.7■□□□□ 0.9
USP48-210ENST00000489108 CEP290O15078 2479 aa20.7■□□□□ 0.9
USP48-210ENST00000489108 SLC4A2P04920 1241 aa20.69■□□□□ 0.9
USP48-210ENST00000489108 CDAN1Q8IWY9 1227 aa20.69■□□□□ 0.9
USP48-210ENST00000489108 FAM43AQ8N2R8 423 aa20.69■□□□□ 0.9
USP48-210ENST00000489108 TDRD3Q9H7E2 651 aaKnown RBP20.69■□□□□ 0.9
USP48-210ENST00000489108 TRIOBPQ9H2D6 2365 aa20.69■□□□□ 0.9
USP48-210ENST00000489108 GTF2A2P52657 109 aa20.68■□□□□ 0.9
USP48-210ENST00000489108 SPDYE2Q495Y8 402 aa20.68■□□□□ 0.9
USP48-210ENST00000489108 SH3TC2Q8TF17 1288 aa20.68■□□□□ 0.9
USP48-210ENST00000489108 TSR2Q969E8 191 aaKnown RBP20.68■□□□□ 0.9
USP48-210ENST00000489108 TEPSINQ96N21 525 aa20.68■□□□□ 0.9
USP48-210ENST00000489108 MAP3K9P80192 1104 aa20.67■□□□□ 0.9
USP48-210ENST00000489108 TNFAIP1Q13829 316 aa20.67■□□□□ 0.9
USP48-210ENST00000489108 ARHGAP39Q9C0H5 1083 aa20.67■□□□□ 0.9
USP48-210ENST00000489108 MYH16Q9H6N6 1097 aa20.67■□□□□ 0.9
USP48-210ENST00000489108 PLIN1O60240 522 aa20.66■□□□□ 0.9
USP48-210ENST00000489108 IFIT5Q13325 482 aaKnown RBP20.66■□□□□ 0.9
USP48-210ENST00000489108 VGLL4Q14135 290 aa20.66■□□□□ 0.9
USP48-210ENST00000489108 SZT2Q5T011 3432 aa20.65■□□□□ 0.9
USP48-210ENST00000489108 A0A1B0GUL6 1792 aa20.65■□□□□ 0.9
USP48-210ENST00000489108 TCP10L2B9ZVM9 353 aa20.65■□□□□ 0.9
USP48-210ENST00000489108 FOXO4P98177 505 aa20.65■□□□□ 0.9
USP48-210ENST00000489108 CHRDL2Q6WN34 429 aa20.65■□□□□ 0.9
USP48-210ENST00000489108 TMEM39BQ9GZU3 492 aa20.65■□□□□ 0.9
USP48-210ENST00000489108 TTF2Q9UNY4 1162 aaKnown RBP20.65■□□□□ 0.9
USP48-210ENST00000489108 ZSWIM8A7E2V4 1837 aa20.64■□□□□ 0.9
USP48-210ENST00000489108 FAM205AQ6ZU69 1335 aa20.64■□□□□ 0.89
USP48-210ENST00000489108 TWISTNBQ3B726 338 aaPredicted RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms