RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 RARSP54136 660 aaKnown RBP28.87■■■□□ 2.21
COL9A3-213ENST00000489045 FKBP1AP62942 108 aaKnown RBP28.87■■■□□ 2.21
COL9A3-213ENST00000489045 KLHDC4Q8TBB5 520 aa28.87■■■□□ 2.21
COL9A3-213ENST00000489045 ZBED3Q96IU2 234 aaPredicted RBP28.87■■■□□ 2.21
COL9A3-213ENST00000489045 API5Q9BZZ5 524 aaKnown RBP28.87■■■□□ 2.21
COL9A3-213ENST00000489045 METTL24Q5JXM2 366 aa28.86■■■□□ 2.21
COL9A3-213ENST00000489045 PRAMEF18Q5VWM3 479 aa28.86■■■□□ 2.21
COL9A3-213ENST00000489045 ZIC5Q96T25 663 aa28.86■■■□□ 2.21
COL9A3-213ENST00000489045 FAM155AB1AL88 458 aaPredicted RBP28.85■■■□□ 2.21
COL9A3-213ENST00000489045 F8W031 263 aaPredicted RBP28.85■■■□□ 2.21
COL9A3-213ENST00000489045 HIBADHP31937 336 aaKnown RBP28.85■■■□□ 2.21
COL9A3-213ENST00000489045 ZNF157P51786 506 aaPredicted RBP28.85■■■□□ 2.21
COL9A3-213ENST00000489045 TDRD7Q8NHU6 1098 aaKnown RBP28.85■■■□□ 2.21
COL9A3-213ENST00000489045 FAM84BQ96KN1 310 aaPredicted RBP28.85■■■□□ 2.21
COL9A3-213ENST00000489045 FKBP1BP68106 108 aa28.84■■■□□ 2.21
COL9A3-213ENST00000489045 DLGAP5Q15398 846 aa28.84■■■□□ 2.21
COL9A3-213ENST00000489045 MIER1Q8N108 512 aa28.84■■■□□ 2.21
COL9A3-213ENST00000489045 VGLL2Q8N8G2 317 aa28.84■■■□□ 2.21
COL9A3-213ENST00000489045 CCDC102AQ96A19 550 aa28.84■■■□□ 2.21
COL9A3-213ENST00000489045 TSKSQ9UJT2 592 aa28.84■■■□□ 2.21
COL9A3-213ENST00000489045 FAM205AQ6ZU69 1335 aa28.84■■■□□ 2.21
COL9A3-213ENST00000489045 UBTFL1P0CB47 393 aaPredicted RBP28.83■■■□□ 2.21
COL9A3-213ENST00000489045 DIEXFQ68CQ4 756 aaKnown RBP28.83■■■□□ 2.21
COL9A3-213ENST00000489045 APOBEC3FQ8IUX4 373 aaKnown RBP28.83■■■□□ 2.21
COL9A3-213ENST00000489045 CAPN15O75808 1086 aa28.82■■■□□ 2.2
COL9A3-213ENST00000489045 MTMR14Q8NCE2 650 aa28.82■■■□□ 2.2
COL9A3-213ENST00000489045 PCDHAC2Q9Y5I4 1007 aa28.82■■■□□ 2.2
COL9A3-213ENST00000489045 KIF16BQ96L93 1317 aa28.82■■■□□ 2.2
COL9A3-213ENST00000489045 PDE8BO95263 885 aa28.81■■■□□ 2.2
COL9A3-213ENST00000489045 SLC10A3P09131 477 aa28.81■■■□□ 2.2
COL9A3-213ENST00000489045 RFX5P48382 616 aaPredicted RBP28.81■■■□□ 2.2
COL9A3-213ENST00000489045 MOB2Q70IA6 237 aa28.81■■■□□ 2.2
COL9A3-213ENST00000489045 AKAP11Q9UKA4 1901 aa28.81■■■□□ 2.2
COL9A3-213ENST00000489045 MYH13Q9UKX3 1938 aa28.81■■■□□ 2.2
COL9A3-213ENST00000489045 CA12O43570 354 aa28.8■■■□□ 2.2
COL9A3-213ENST00000489045 CFAP100Q494V2 611 aa28.8■■■□□ 2.2
COL9A3-213ENST00000489045 MFSD14BQ5SR56 506 aa28.8■■■□□ 2.2
COL9A3-213ENST00000489045 COL1A1P02452 1464 aaPredicted RBP28.79■■■□□ 2.2
COL9A3-213ENST00000489045 NF2P35240 595 aa28.79■■■□□ 2.2
COL9A3-213ENST00000489045 VPS37DQ86XT2 251 aa28.79■■■□□ 2.2
COL9A3-213ENST00000489045 KIF23Q02241 960 aaPredicted RBP28.78■■■□□ 2.2
COL9A3-213ENST00000489045 PTPN12Q05209 780 aaKnown RBP28.78■■■□□ 2.2
COL9A3-213ENST00000489045 FBXO33Q7Z6M2 555 aa28.78■■■□□ 2.2
COL9A3-213ENST00000489045 RASAL3Q86YV0 1011 aa28.78■■■□□ 2.2
COL9A3-213ENST00000489045 SPDYE2BA6NHP3 402 aa28.77■■■□□ 2.2
COL9A3-213ENST00000489045 EYA2O00167 538 aa28.77■■■□□ 2.2
COL9A3-213ENST00000489045 SPDYE6P0CI01 402 aa28.77■■■□□ 2.2
COL9A3-213ENST00000489045 TTLL12Q14166 644 aaPredicted RBP28.77■■■□□ 2.2
COL9A3-213ENST00000489045 CAVIN4Q5BKX8 364 aa28.77■■■□□ 2.2
COL9A3-213ENST00000489045 ARHGAP45Q92619 1136 aa28.77■■■□□ 2.2
COL9A3-213ENST00000489045 IQSEC3Q9UPP2 1182 aaPredicted RBP28.77■■■□□ 2.2
COL9A3-213ENST00000489045 CASP8AP2Q9UKL3 1982 aa28.76■■■□□ 2.19
COL9A3-213ENST00000489045 UBE2Q2LH0YL09 131 aa28.76■■■□□ 2.19
COL9A3-213ENST00000489045 RBM5P52756 815 aaKnown RBP eCLIP28.76■■■□□ 2.19
COL9A3-213ENST00000489045 PUM3Q15397 648 aaKnown RBP28.76■■■□□ 2.19
COL9A3-213ENST00000489045 PRMT6Q96LA8 375 aaPredicted RBP28.76■■■□□ 2.19
COL9A3-213ENST00000489045 LRRFIP2Q9Y608 721 aaKnown RBP28.76■■■□□ 2.19
COL9A3-213ENST00000489045 AOX1Q06278 1338 aa28.75■■■□□ 2.19
COL9A3-213ENST00000489045 CLRN2A0PK11 232 aa28.75■■■□□ 2.19
COL9A3-213ENST00000489045 MYO1BO43795 1136 aa28.75■■■□□ 2.19
COL9A3-213ENST00000489045 HNRNPUQ00839 825 aaKnown RBP eCLIP28.75■■■□□ 2.19
COL9A3-213ENST00000489045 MEIS3Q99687 375 aa28.75■■■□□ 2.19
COL9A3-213ENST00000489045 TTF2Q9UNY4 1162 aaKnown RBP28.75■■■□□ 2.19
COL9A3-213ENST00000489045 FGFR2P21802 821 aa28.74■■■□□ 2.19
COL9A3-213ENST00000489045 CHAF1AQ13111 956 aaPredicted RBP28.74■■■□□ 2.19
COL9A3-213ENST00000489045 ATG9AQ7Z3C6 839 aa28.74■■■□□ 2.19
COL9A3-213ENST00000489045 DEFB129Q9H1M3 183 aa28.74■■■□□ 2.19
COL9A3-213ENST00000489045 HDAC5Q9UQL6 1122 aa28.74■■■□□ 2.19
COL9A3-213ENST00000489045 FRAT2O75474 233 aaPredicted RBP28.73■■■□□ 2.19
COL9A3-213ENST00000489045 BCAMP50895 628 aa28.73■■■□□ 2.19
COL9A3-213ENST00000489045 INTS3Q68E01 1043 aaKnown RBP28.73■■■□□ 2.19
COL9A3-213ENST00000489045 SIL1Q9H173 461 aa28.73■■■□□ 2.19
COL9A3-213ENST00000489045 IFIT1P09914 478 aaKnown RBP28.72■■■□□ 2.19
COL9A3-213ENST00000489045 PRKG1Q13976 671 aa28.72■■■□□ 2.19
COL9A3-213ENST00000489045 VEZTQ9HBM0 779 aa28.72■■■□□ 2.19
COL9A3-213ENST00000489045 SERPINA10Q9UK55 444 aa28.72■■■□□ 2.19
COL9A3-213ENST00000489045 SSC5DA1L4H1 1573 aa28.71■■■□□ 2.19
COL9A3-213ENST00000489045 BCAR3O75815 825 aa28.71■■■□□ 2.19
COL9A3-213ENST00000489045 PPP2R3BQ9Y5P8 575 aa28.71■■■□□ 2.19
COL9A3-213ENST00000489045 CIAO1O76071 339 aa28.7■■■□□ 2.18
COL9A3-213ENST00000489045 SLC5A1P13866 664 aa28.7■■■□□ 2.18
COL9A3-213ENST00000489045 GRIK5Q16478 980 aa28.7■■■□□ 2.18
COL9A3-213ENST00000489045 ARMC9Q7Z3E5 817 aa28.7■■■□□ 2.18
COL9A3-213ENST00000489045 CSRNP1Q96S65 589 aa28.7■■■□□ 2.18
COL9A3-213ENST00000489045 FBXO3Q9UK99 471 aa28.7■■■□□ 2.18
COL9A3-213ENST00000489045 TNNQ9UQP3 1299 aa28.7■■■□□ 2.18
COL9A3-213ENST00000489045 IPO8O15397 1037 aaKnown RBP28.69■■■□□ 2.18
COL9A3-213ENST00000489045 TRIM27P14373 513 aa28.69■■■□□ 2.18
COL9A3-213ENST00000489045 TBC1D22AQ8WUA7 517 aa28.69■■■□□ 2.18
COL9A3-213ENST00000489045 LPIN2Q92539 896 aa28.69■■■□□ 2.18
COL9A3-213ENST00000489045 FRAT1Q92837 279 aaPredicted RBP28.69■■■□□ 2.18
COL9A3-213ENST00000489045 GNAI3P08754 354 aa28.68■■■□□ 2.18
COL9A3-213ENST00000489045 CRKP46108 304 aa28.68■■■□□ 2.18
COL9A3-213ENST00000489045 ATF7IPQ6VMQ6 1270 aa28.68■■■□□ 2.18
COL9A3-213ENST00000489045 SAGE1Q9NXZ1 904 aa28.68■■■□□ 2.18
COL9A3-213ENST00000489045 ANGEL1Q9UNK9 670 aaKnown RBP28.68■■■□□ 2.18
COL9A3-213ENST00000489045 FZD1Q9UP38 647 aa28.68■■■□□ 2.18
COL9A3-213ENST00000489045 PA2G4Q9UQ80 394 aaKnown RBP28.68■■■□□ 2.18
COL9A3-213ENST00000489045 SPDYE2Q495Y8 402 aa28.67■■■□□ 2.18
COL9A3-213ENST00000489045 RNF186Q9NXI6 227 aa28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms