RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 TSHZ2Q9NRE2 1034 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 PIM2Q9P1W9 311 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 CHD4Q14839 1912 aa12.95□□□□□ -0.34
USP11-209ENST00000488848 CCDC88AQ3V6T2 1871 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 GOLIM4O00461 696 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 RBM25P49756 843 aaKnown RBP12.94□□□□□ -0.34
USP11-209ENST00000488848 FKBP1AP62942 108 aaKnown RBP12.94□□□□□ -0.34
USP11-209ENST00000488848 KIAA2012Q0VF49 1180 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 ZMYM1Q5SVZ6 1142 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 ZSCAN25Q6NSZ9 544 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 SLC51AQ86UW1 340 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 IL27Q8NEV9 243 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 RILPL2Q969X0 211 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 TBC1D32Q96NH3 1257 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 DNAJC2Q99543 621 aaKnown RBP12.94□□□□□ -0.34
USP11-209ENST00000488848 FSD1Q9BTV5 496 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP11-209ENST00000488848 CD209Q9NNX6 404 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 HELLSQ9NRZ9 838 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 SUGT1Q9Y2Z0 365 aa12.94□□□□□ -0.34
USP11-209ENST00000488848 TCRBV5S4A2TA0A5A2 114 aa12.93□□□□□ -0.34
USP11-209ENST00000488848 RNF113AO15541 343 aaKnown RBP12.93□□□□□ -0.34
USP11-209ENST00000488848 SEC24BO95487 1268 aa12.93□□□□□ -0.34
USP11-209ENST00000488848 PI16Q6UXB8 463 aa12.93□□□□□ -0.34
USP11-209ENST00000488848 PODNQ7Z5L7 613 aa12.93□□□□□ -0.34
USP11-209ENST00000488848 ZGPATQ8N5A5 531 aaKnown RBP12.93□□□□□ -0.34
USP11-209ENST00000488848 WDR66Q8TBY9 1149 aa12.93□□□□□ -0.34
USP11-209ENST00000488848 EDC3Q96F86 508 aaKnown RBP12.93□□□□□ -0.34
USP11-209ENST00000488848 ANTXR1Q9H6X2 564 aa12.93□□□□□ -0.34
USP11-209ENST00000488848 DIAPH3Q9NSV4 1193 aa12.93□□□□□ -0.34
USP11-209ENST00000488848 A0A0G2JLW4 131 aa12.92□□□□□ -0.34
USP11-209ENST00000488848 ADD2P35612 726 aa12.92□□□□□ -0.34
USP11-209ENST00000488848 FKBP4Q02790 459 aaKnown RBP eCLIP12.92□□□□□ -0.34
USP11-209ENST00000488848 DALRD3Q5D0E6 543 aaKnown RBP12.92□□□□□ -0.34
USP11-209ENST00000488848 VPS37DQ86XT2 251 aa12.92□□□□□ -0.34
USP11-209ENST00000488848 TBC1D22AQ8WUA7 517 aa12.92□□□□□ -0.34
USP11-209ENST00000488848 APPBP2Q92624 585 aa12.92□□□□□ -0.34
USP11-209ENST00000488848 IL25Q9H293 177 aa12.92□□□□□ -0.34
USP11-209ENST00000488848 PIH1D3Q9NQM4 214 aaKnown RBP12.92□□□□□ -0.34
USP11-209ENST00000488848 SCN9AQ15858 1988 aa12.92□□□□□ -0.34
USP11-209ENST00000488848 ZMYM6O95789 1325 aa12.91□□□□□ -0.34
USP11-209ENST00000488848 A0A0D9SFI3 127 aa12.91□□□□□ -0.34
USP11-209ENST00000488848 MAP4K4O95819 1239 aaPredicted RBP12.91□□□□□ -0.34
USP11-209ENST00000488848 MAP3K12Q12852 859 aa12.91□□□□□ -0.34
USP11-209ENST00000488848 NMIQ13287 307 aaPredicted RBP12.91□□□□□ -0.34
USP11-209ENST00000488848 KCNB2Q92953 911 aa12.91□□□□□ -0.34
USP11-209ENST00000488848 USP26Q9BXU7 913 aa12.91□□□□□ -0.34
USP11-209ENST00000488848 ZC3H12CQ9C0D7 883 aaKnown RBP12.91□□□□□ -0.34
USP11-209ENST00000488848 LSG1Q9H089 658 aaKnown RBP12.91□□□□□ -0.34
USP11-209ENST00000488848 UPF2Q9HAU5 1272 aaKnown RBP12.91□□□□□ -0.34
USP11-209ENST00000488848 NDUFB9Q9Y6M9 179 aa12.91□□□□□ -0.34
USP11-209ENST00000488848 C6orf229H3BNL8 230 aa12.9□□□□□ -0.34
USP11-209ENST00000488848 PDE6AP16499 860 aa12.9□□□□□ -0.34
USP11-209ENST00000488848 MFAP1P55081 439 aaKnown RBP12.9□□□□□ -0.34
USP11-209ENST00000488848 ANAPC15P60006 121 aa12.9□□□□□ -0.34
USP11-209ENST00000488848 WASHC4Q2M389 1173 aa12.9□□□□□ -0.34
USP11-209ENST00000488848 MCMDC2Q4G0Z9 681 aa12.9□□□□□ -0.34
USP11-209ENST00000488848 SPTY2D1Q68D10 685 aaPredicted RBP12.9□□□□□ -0.34
USP11-209ENST00000488848 OLFM4Q6UX06 510 aa12.9□□□□□ -0.34
USP11-209ENST00000488848 RPAP1Q9BWH6 1393 aaPredicted RBP12.9□□□□□ -0.34
USP11-209ENST00000488848 MAST3O60307 1309 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 CCDC171Q6TFL3 1326 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 CERS3Q8IU89 383 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 MAP4K1Q92918 833 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 FAM163AQ96GL9 167 aaPredicted RBP12.89□□□□□ -0.35
USP11-209ENST00000488848 FAM227BQ96M60 508 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 DSCC1Q9BVC3 393 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 BCL11AQ9H165 835 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 COL4A5P29400 1685 aa12.89□□□□□ -0.35
USP11-209ENST00000488848 LAMA4Q16363 1823 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 DICER1Q9UPY3 1922 aaKnown RBP12.88□□□□□ -0.35
USP11-209ENST00000488848 C21orf2O43822 256 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 SLC9C2Q5TAH2 1124 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 STRIP1Q5VSL9 837 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 CWC27Q6UX04 472 aaKnown RBP12.88□□□□□ -0.35
USP11-209ENST00000488848 ZNF384Q8TF68 577 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 OSBP2Q969R2 916 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 NSUN4Q96CB9 384 aaKnown RBP12.88□□□□□ -0.35
USP11-209ENST00000488848 MRIQ9BWK5 157 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 WWC3Q9ULE0 1092 aa12.88□□□□□ -0.35
USP11-209ENST00000488848 NFKBIEO00221 500 aa12.87□□□□□ -0.35
USP11-209ENST00000488848 HSPA4P34932 840 aa12.87□□□□□ -0.35
USP11-209ENST00000488848 MMP14P50281 582 aa12.87□□□□□ -0.35
USP11-209ENST00000488848 TSGA10IPQ3SY00 556 aa12.87□□□□□ -0.35
USP11-209ENST00000488848 ZNF589Q86UQ0 364 aaPredicted RBP12.87□□□□□ -0.35
USP11-209ENST00000488848 C22orf23Q9BZE7 217 aa12.87□□□□□ -0.35
USP11-209ENST00000488848 GAKO14976 1311 aa12.87□□□□□ -0.35
USP11-209ENST00000488848 ZNF532Q9HCE3 1301 aa12.87□□□□□ -0.35
USP11-209ENST00000488848 DDX60LQ5H9U9 1706 aaKnown RBP12.86□□□□□ -0.35
USP11-209ENST00000488848 TIAM2Q8IVF5 1701 aa12.86□□□□□ -0.35
USP11-209ENST00000488848 FOXP2O15409 715 aa12.86□□□□□ -0.35
USP11-209ENST00000488848 IDH1O75874 414 aaKnown RBP12.86□□□□□ -0.35
USP11-209ENST00000488848 HDLBPQ00341 1268 aaKnown RBP12.86□□□□□ -0.35
USP11-209ENST00000488848 ALX1Q15699 326 aa12.86□□□□□ -0.35
USP11-209ENST00000488848 ERICH6Q7L0X2 663 aa12.86□□□□□ -0.35
USP11-209ENST00000488848 NLGN2Q8NFZ4 835 aa12.86□□□□□ -0.35
USP11-209ENST00000488848 GPR101Q96P66 508 aaPredicted RBP12.86□□□□□ -0.35
USP11-209ENST00000488848 TAOK3Q9H2K8 898 aa12.86□□□□□ -0.35
USP11-209ENST00000488848 MYO3BQ8WXR4 1341 aa12.86□□□□□ -0.35
USP11-209ENST00000488848 FOCADQ5VW36 1801 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms