RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 GTF2IP78347 998 aa23.61■■□□□ 1.37
CCM2-216ENST00000488727 USP17L3A6NCW0 530 aa23.6■■□□□ 1.37
CCM2-216ENST00000488727 USP17L4A6NCW7 530 aa23.6■■□□□ 1.37
CCM2-216ENST00000488727 ARID4AP29374 1257 aaPredicted RBP23.6■■□□□ 1.37
CCM2-216ENST00000488727 RASGRF1Q13972 1273 aa23.6■■□□□ 1.37
CCM2-216ENST00000488727 USP17L1Q7RTZ2 530 aa23.6■■□□□ 1.37
CCM2-216ENST00000488727 OTUD7AQ8TE49 926 aaPredicted RBP23.6■■□□□ 1.37
CCM2-216ENST00000488727 LNPKQ9C0E8 428 aa23.6■■□□□ 1.37
CCM2-216ENST00000488727 GNL3LQ9NVN8 582 aaKnown RBP23.6■■□□□ 1.37
CCM2-216ENST00000488727 DDNO94850 711 aaPredicted RBP23.59■■□□□ 1.37
CCM2-216ENST00000488727 SCARF1Q14162 830 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 CCDC158Q5M9N0 1113 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 TTLL5Q6EMB2 1281 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 CHD1LQ86WJ1 897 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 FRAT2O75474 233 aaPredicted RBP23.59■■□□□ 1.37
CCM2-216ENST00000488727 TTC39AQ5SRH9 613 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 DACT2Q5SW24 774 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 STRIP1Q5VSL9 837 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 PI16Q6UXB8 463 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 GPC2Q8N158 579 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 FBXW7Q969H0 707 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 MXD3Q9BW11 206 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 GJA3Q9Y6H8 435 aa23.59■■□□□ 1.37
CCM2-216ENST00000488727 FAM205AQ6ZU69 1335 aa23.58■■□□□ 1.37
CCM2-216ENST00000488727 GLTPD2A6NH11 291 aa23.58■■□□□ 1.37
CCM2-216ENST00000488727 ZBTB22O15209 634 aa23.58■■□□□ 1.37
CCM2-216ENST00000488727 VIL1P09327 827 aaKnown RBP23.58■■□□□ 1.37
CCM2-216ENST00000488727 MCAMP43121 646 aa23.58■■□□□ 1.37
CCM2-216ENST00000488727 SEMA3EO15041 775 aa23.57■■□□□ 1.36
CCM2-216ENST00000488727 SEC24BO95487 1268 aa23.57■■□□□ 1.36
CCM2-216ENST00000488727 CHAF1AQ13111 956 aaPredicted RBP23.57■■□□□ 1.36
CCM2-216ENST00000488727 TNIP1Q15025 636 aa23.57■■□□□ 1.36
CCM2-216ENST00000488727 DPY19L2Q6NUT2 758 aa23.57■■□□□ 1.36
CCM2-216ENST00000488727 ZNF512BQ96KM6 892 aaPredicted RBP23.57■■□□□ 1.36
CCM2-216ENST00000488727 SALL3Q9BXA9 1300 aa23.57■■□□□ 1.36
CCM2-216ENST00000488727 UQCRFS1P1P0C7P4 283 aa23.56■■□□□ 1.36
CCM2-216ENST00000488727 CERS5Q8N5B7 392 aa23.56■■□□□ 1.36
CCM2-216ENST00000488727 HMG20BQ9P0W2 317 aa23.56■■□□□ 1.36
CCM2-216ENST00000488727 ZBTB12Q9Y330 459 aaPredicted RBP23.56■■□□□ 1.36
CCM2-216ENST00000488727 DENND2AQ9ULE3 1009 aa23.56■■□□□ 1.36
CCM2-216ENST00000488727 TSHZ3Q63HK5 1081 aa23.55■■□□□ 1.36
CCM2-216ENST00000488727 RSBN1LQ6PCB5 846 aaPredicted RBP23.55■■□□□ 1.36
CCM2-216ENST00000488727 PDS5AQ29RF7 1337 aaKnown RBP23.54■■□□□ 1.36
CCM2-216ENST00000488727 SPATA5Q8NB90 893 aa23.54■■□□□ 1.36
CCM2-216ENST00000488727 UPF2Q9HAU5 1272 aaKnown RBP23.54■■□□□ 1.36
CCM2-216ENST00000488727 SNRKQ9NRH2 765 aa23.54■■□□□ 1.36
CCM2-216ENST00000488727 WDR90Q96KV7 1748 aa23.54■■□□□ 1.36
CCM2-216ENST00000488727 GMPSP49915 693 aaPredicted RBP23.53■■□□□ 1.36
CCM2-216ENST00000488727 MFSD14BQ5SR56 506 aa23.53■■□□□ 1.36
CCM2-216ENST00000488727 GMLQ99445 158 aa23.53■■□□□ 1.36
CCM2-216ENST00000488727 ECHDC1Q9NTX5 307 aa23.53■■□□□ 1.36
CCM2-216ENST00000488727 MYO5AQ9Y4I1 1855 aaKnown RBP23.53■■□□□ 1.36
CCM2-216ENST00000488727 MX1P20591 662 aa23.53■■□□□ 1.36
CCM2-216ENST00000488727 SCNN1DP51172 638 aa23.53■■□□□ 1.36
CCM2-216ENST00000488727 DAXXQ9UER7 740 aaPredicted RBP23.53■■□□□ 1.36
CCM2-216ENST00000488727 NDUFB9Q9Y6M9 179 aa23.53■■□□□ 1.36
CCM2-216ENST00000488727 ATP5JP18859 108 aa23.52■■□□□ 1.36
CCM2-216ENST00000488727 GRIK5Q16478 980 aa23.52■■□□□ 1.36
CCM2-216ENST00000488727 L3MBTL3Q96JM7 780 aaPredicted RBP23.52■■□□□ 1.36
CCM2-216ENST00000488727 TBC1D32Q96NH3 1257 aa23.52■■□□□ 1.36
CCM2-216ENST00000488727 ZAP70P43403 619 aa23.51■■□□□ 1.35
CCM2-216ENST00000488727 FKBP1AP62942 108 aaKnown RBP23.51■■□□□ 1.35
CCM2-216ENST00000488727 AGBL3Q8NEM8 1001 aa23.51■■□□□ 1.35
CCM2-216ENST00000488727 WDR66Q8TBY9 1149 aa23.51■■□□□ 1.35
CCM2-216ENST00000488727 ZNF526Q8TF50 670 aaPredicted RBP23.51■■□□□ 1.35
CCM2-216ENST00000488727 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.51■■□□□ 1.35
CCM2-216ENST00000488727 MYO3BQ8WXR4 1341 aa23.51■■□□□ 1.35
CCM2-216ENST00000488727 SHTN1A0MZ66 631 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 YY1P25490 414 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 TBC1D22AQ8WUA7 517 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 SCN4AP35499 1836 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 TTC41PQ6P2S7 1318 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 SALL1Q9NSC2 1324 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 RPS12P25398 132 aaKnown RBP23.5■■□□□ 1.35
CCM2-216ENST00000488727 NBR1Q14596 966 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 PI4K2BQ8TCG2 481 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 DPF2Q92785 391 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 GPATCH3Q96I76 525 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 BOLA2Q9H3K6 86 aa23.5■■□□□ 1.35
CCM2-216ENST00000488727 POTECB2RU33 542 aa23.49■■□□□ 1.35
CCM2-216ENST00000488727 CYP2E1P05181 493 aaPredicted RBP23.49■■□□□ 1.35
CCM2-216ENST00000488727 PDE1AP54750 535 aa23.49■■□□□ 1.35
CCM2-216ENST00000488727 TBC1D9Q6ZT07 1266 aa23.49■■□□□ 1.35
CCM2-216ENST00000488727 KIAA0825Q8IV33 1275 aa23.49■■□□□ 1.35
CCM2-216ENST00000488727 PLEKHM2Q8IWE5 1019 aa23.49■■□□□ 1.35
CCM2-216ENST00000488727 STAP2Q9UGK3 403 aa23.49■■□□□ 1.35
CCM2-216ENST00000488727 GPRC5DQ9NZD1 345 aa23.48■■□□□ 1.35
CCM2-216ENST00000488727 DOCK2Q92608 1830 aa23.48■■□□□ 1.35
CCM2-216ENST00000488727 PRDX5P30044 214 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 DNAJC2Q99543 621 aaKnown RBP23.47■■□□□ 1.35
CCM2-216ENST00000488727 ANTXR1Q9H6X2 564 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 ADAMTSL1Q8N6G6 1762 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 F8W031 263 aaPredicted RBP23.47■■□□□ 1.35
CCM2-216ENST00000488727 EPS15P42566 896 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 MICALL2Q8IY33 904 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 EDC3Q96F86 508 aaKnown RBP23.47■■□□□ 1.35
CCM2-216ENST00000488727 HAUS7Q99871 368 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 NMRK2Q9NPI5 230 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 ABCF2Q9UG63 623 aa23.47■■□□□ 1.35
CCM2-216ENST00000488727 CNOT7Q9UIV1 285 aaKnown RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 491.8 ms