RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 KIAA1551Q9HCM1 1747 aa12.68□□□□□ -0.38
SKA1-204ENST00000488454 RIMBP2O15034 1052 aa12.68□□□□□ -0.38
SKA1-204ENST00000488454 SLC5A1P13866 664 aa12.68□□□□□ -0.38
SKA1-204ENST00000488454 SLC51AQ86UW1 340 aa12.68□□□□□ -0.38
SKA1-204ENST00000488454 LPIN2Q92539 896 aa12.68□□□□□ -0.38
SKA1-204ENST00000488454 BCL11AQ9H165 835 aa12.68□□□□□ -0.38
SKA1-204ENST00000488454 GPHNQ9NQX3 736 aaPredicted RBP12.68□□□□□ -0.38
SKA1-204ENST00000488454 ZNF277Q9NRM2 450 aaPredicted RBP12.68□□□□□ -0.38
SKA1-204ENST00000488454 DLEC1Q9Y238 1755 aa12.68□□□□□ -0.38
SKA1-204ENST00000488454 LTBP3Q9NS15 1303 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 NFKBIEO00221 500 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 PPIP5K2O43314 1243 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 SASH1O94885 1247 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 LMNB1P20700 586 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 IARSP41252 1262 aaKnown RBP12.67□□□□□ -0.38
SKA1-204ENST00000488454 RASSF7Q02833 373 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 ATP2B3Q16720 1220 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 DOK7Q18PE1 504 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 CAVIN4Q5BKX8 364 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 VPS37DQ86XT2 251 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 CLASRPQ8N2M8 674 aaKnown RBP12.67□□□□□ -0.38
SKA1-204ENST00000488454 LARGE2Q8N3Y3 721 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 RHPN1Q8TCX5 695 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 CCDC136Q96JN2 1154 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 NEUROD6Q96NK8 337 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 LRRCC1Q9C099 1032 aa12.67□□□□□ -0.38
SKA1-204ENST00000488454 IGHDP01880 384 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 TIMM10P62072 90 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 AOC3Q16853 763 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 GORABQ5T7V8 394 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 ANKRD45Q5TZF3 282 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 VGLL2Q8N8G2 317 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 JDP2Q8WYK2 163 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 CRISPLD2Q9H0B8 497 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 GPR108Q9NPR9 543 aa12.66□□□□□ -0.38
SKA1-204ENST00000488454 TAF1P21675 1872 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 A0A1B0GUL7 405 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 SNAP23O00161 211 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 KIAA2012Q0VF49 1180 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 TNNI3KQ59H18 835 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 ZNF804AQ7Z570 1209 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 NIM1KQ8IY84 436 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 GPR101Q96P66 508 aaPredicted RBP12.65□□□□□ -0.38
SKA1-204ENST00000488454 IL1RAPL2Q9NP60 686 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 PPP4R2Q9NY27 417 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 RNF181Q9P0P0 153 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 FPGT-TNNI3KV9GXZ4 949 aa12.65□□□□□ -0.38
SKA1-204ENST00000488454 COL4A1P02462 1669 aa12.64□□□□□ -0.39
SKA1-204ENST00000488454 WTIPA6NIX2 430 aaPredicted RBP12.64□□□□□ -0.39
SKA1-204ENST00000488454 FRAT2O75474 233 aaPredicted RBP12.64□□□□□ -0.39
SKA1-204ENST00000488454 IFIT2P09913 472 aaKnown RBP12.64□□□□□ -0.39
SKA1-204ENST00000488454 FGFR2P21802 821 aa12.64□□□□□ -0.39
SKA1-204ENST00000488454 HIBADHP31937 336 aaKnown RBP12.64□□□□□ -0.39
SKA1-204ENST00000488454 C9orf131Q5VYM1 1079 aa12.64□□□□□ -0.39
SKA1-204ENST00000488454 B4GALNT3Q6L9W6 998 aa12.64□□□□□ -0.39
SKA1-204ENST00000488454 C15orf52Q6ZUT6 534 aaKnown RBP12.64□□□□□ -0.39
SKA1-204ENST00000488454 AACSQ86V21 672 aa12.64□□□□□ -0.39
SKA1-204ENST00000488454 COA1Q9GZY4 146 aa12.64□□□□□ -0.39
SKA1-204ENST00000488454 GNL3LQ9NVN8 582 aaKnown RBP12.64□□□□□ -0.39
SKA1-204ENST00000488454 BRCA1P38398 1863 aaKnown RBP12.63□□□□□ -0.39
SKA1-204ENST00000488454 FOXK1P85037 733 aa12.63□□□□□ -0.39
SKA1-204ENST00000488454 CCDC158Q5M9N0 1113 aa12.63□□□□□ -0.39
SKA1-204ENST00000488454 XAGE2Q96GT9 111 aa12.63□□□□□ -0.39
SKA1-204ENST00000488454 CCDC8Q9H0W5 538 aaPredicted RBP12.63□□□□□ -0.39
SKA1-204ENST00000488454 MED23Q9ULK4 1368 aa12.63□□□□□ -0.39
SKA1-204ENST00000488454 CACNA1SQ13698 1873 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 SMARCA5O60264 1052 aaPredicted RBP12.62□□□□□ -0.39
SKA1-204ENST00000488454 KLRK1P26718 216 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 GYG1P46976 350 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 BCAMP50895 628 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 EIF6P56537 245 aaKnown RBP12.62□□□□□ -0.39
SKA1-204ENST00000488454 DSG2Q14126 1118 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 CENPQQ7L2Z9 268 aaPredicted RBP12.62□□□□□ -0.39
SKA1-204ENST00000488454 PODNQ7Z5L7 613 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 TXNRD3Q86VQ6 643 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 SMC5Q8IY18 1101 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 ZNF710Q8N1W2 664 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 EAF2Q96CJ1 260 aaPredicted RBP12.62□□□□□ -0.39
SKA1-204ENST00000488454 FAM84BQ96KN1 310 aaPredicted RBP12.62□□□□□ -0.39
SKA1-204ENST00000488454 DBNDD1Q9H9R9 158 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 ZNRF3Q9ULT6 936 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 GOLGB1Q14789 3259 aaKnown RBP12.62□□□□□ -0.39
SKA1-204ENST00000488454 SNED1Q8TER0 1413 aa12.62□□□□□ -0.39
SKA1-204ENST00000488454 ARFGEF1Q9Y6D6 1849 aa12.61□□□□□ -0.39
SKA1-204ENST00000488454 ECE2O60344 883 aa12.61□□□□□ -0.39
SKA1-204ENST00000488454 PDE4AP27815 886 aa12.61□□□□□ -0.39
SKA1-204ENST00000488454 POTEGQ6S5H5 508 aa12.61□□□□□ -0.39
SKA1-204ENST00000488454 FBXO33Q7Z6M2 555 aa12.61□□□□□ -0.39
SKA1-204ENST00000488454 CD209Q9NNX6 404 aa12.61□□□□□ -0.39
SKA1-204ENST00000488454 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.61□□□□□ -0.39
SKA1-204ENST00000488454 POTEMA6NI47 508 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 UQCRFS1P1P0C7P4 283 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 ADORA1P30542 326 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 TTC39AQ5SRH9 613 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 CCDC102BQ68D86 513 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 CHD1LQ86WJ1 897 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 FBXW7Q969H0 707 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 GPATCH3Q96I76 525 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 DBNDD2Q9BQY9 259 aa12.6□□□□□ -0.39
SKA1-204ENST00000488454 SPEF2Q9C093 1822 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms