RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 ZBED3Q96IU2 234 aaPredicted RBP11.99□□□□□ -0.49
COL17A1-207ENST00000488320 CEP290O15078 2479 aa11.98□□□□□ -0.49
COL17A1-207ENST00000488320 IGHMBP2P38935 993 aaKnown RBP11.98□□□□□ -0.49
COL17A1-207ENST00000488320 KCNJ4P48050 445 aa11.98□□□□□ -0.49
COL17A1-207ENST00000488320 RBM5P52756 815 aaKnown RBP eCLIP11.98□□□□□ -0.49
COL17A1-207ENST00000488320 DUSP27Q5VZP5 1158 aa11.98□□□□□ -0.49
COL17A1-207ENST00000488320 HTATIP2Q9BUP3 242 aa11.98□□□□□ -0.49
COL17A1-207ENST00000488320 PHAXQ9H814 394 aaKnown RBP11.98□□□□□ -0.49
COL17A1-207ENST00000488320 SPEF2Q9C093 1822 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 ZNF804BA4D1E1 1349 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 CCL15-CCL14A0A0B4J2E2 113 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 ECM2O94769 699 aaPredicted RBP11.97□□□□□ -0.49
COL17A1-207ENST00000488320 CTSWP56202 376 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 CCL15Q16663 113 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 CFAP100Q494V2 611 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 PPP4R3CPQ6ZMV5 832 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 NR2E3Q9Y5X4 410 aa11.97□□□□□ -0.49
COL17A1-207ENST00000488320 DDX58O95786 925 aaKnown RBP11.96□□□□□ -0.49
COL17A1-207ENST00000488320 GTF2A2P52657 109 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 RASA3Q14644 834 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 MTMR14Q8NCE2 650 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 TTLL11Q8NHH1 800 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 NKX2-3Q8TAU0 364 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 PRMT6Q96LA8 375 aaPredicted RBP11.96□□□□□ -0.49
COL17A1-207ENST00000488320 MPHOSPH8Q99549 860 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 ANKRD2Q9GZV1 360 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 GREM2Q9H772 168 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 PCDHAC2Q9Y5I4 1007 aa11.96□□□□□ -0.49
COL17A1-207ENST00000488320 ZNF646O15015 1829 aaPredicted RBP11.95□□□□□ -0.5
COL17A1-207ENST00000488320 LAMB1P07942 1786 aa11.95□□□□□ -0.5
COL17A1-207ENST00000488320 KLRK1P26718 216 aa11.95□□□□□ -0.5
COL17A1-207ENST00000488320 MTFR1Q15390 333 aa11.95□□□□□ -0.5
COL17A1-207ENST00000488320 BRI3BPQ8WY22 251 aa11.95□□□□□ -0.5
COL17A1-207ENST00000488320 MS4A4AQ96JQ5 239 aa11.95□□□□□ -0.5
COL17A1-207ENST00000488320 METTL22Q9BUU2 404 aaPredicted RBP11.95□□□□□ -0.5
COL17A1-207ENST00000488320 CD209Q9NNX6 404 aa11.95□□□□□ -0.5
COL17A1-207ENST00000488320 SSC5DA1L4H1 1573 aa11.95□□□□□ -0.5
COL17A1-207ENST00000488320 ELL2O00472 640 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-207ENST00000488320 GNRH1P01148 92 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 MNX1P50219 401 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-207ENST00000488320 PRMT2P55345 433 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 MAP3K9P80192 1104 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 CCDC146Q8IYE0 955 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 FAM43AQ8N2R8 423 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 ARHGAP39Q9C0H5 1083 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 BIN2Q9UBW5 565 aaPredicted RBP11.94□□□□□ -0.5
COL17A1-207ENST00000488320 CSADQ9Y600 493 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 ECM29Q5VYK3 1845 aa11.94□□□□□ -0.5
COL17A1-207ENST00000488320 SPDYE2BA6NHP3 402 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 TLR2O60603 784 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 SPDYE6P0CI01 402 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 HOXD10P28358 340 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 LACTBP83111 547 aaPredicted RBP11.93□□□□□ -0.5
COL17A1-207ENST00000488320 TNFAIP1Q13829 316 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 CERS5Q8N5B7 392 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 RAET1EQ8TD07 263 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 CNKSR2Q8WXI2 1034 aa11.93□□□□□ -0.5
COL17A1-207ENST00000488320 MYH3P11055 1940 aa11.92□□□□□ -0.5
COL17A1-207ENST00000488320 NEXNQ0ZGT2 675 aa11.92□□□□□ -0.5
COL17A1-207ENST00000488320 SHISA4Q96DD7 197 aa11.92□□□□□ -0.5
COL17A1-207ENST00000488320 RNF208Q9H0X6 261 aa11.92□□□□□ -0.5
COL17A1-207ENST00000488320 TRIM35Q9UPQ4 493 aa11.92□□□□□ -0.5
COL17A1-207ENST00000488320 JAG2Q9Y219 1238 aa11.92□□□□□ -0.5
COL17A1-207ENST00000488320 MAP3K2Q9Y2U5 619 aa11.92□□□□□ -0.5
COL17A1-207ENST00000488320 A0A1W2PPC1 479 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 ZBTB7BO15156 539 aaPredicted RBP11.91□□□□□ -0.5
COL17A1-207ENST00000488320 FMNL1O95466 1100 aaPredicted RBP11.91□□□□□ -0.5
COL17A1-207ENST00000488320 CETPP11597 493 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 ITGA6P23229 1130 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 GRK4P32298 578 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 PSMC4P43686 418 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 GJA8P48165 433 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 UBXN2AP68543 259 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.91□□□□□ -0.5
COL17A1-207ENST00000488320 LRCH3Q96II8 777 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 TRIM47Q96LD4 638 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 PRO3102Q9H379 93 aa11.91□□□□□ -0.5
COL17A1-207ENST00000488320 ZSWIM8A7E2V4 1837 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 TCP10L2B9ZVM9 353 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 EVI5O60447 810 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 GJB1P08034 283 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 CCL5P13501 91 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 TNNI2P48788 182 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 CHRNDQ07001 517 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 VGLL4Q14135 290 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 ZNF804AQ7Z570 1209 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 TDRD3Q9H7E2 651 aaKnown RBP11.9□□□□□ -0.5
COL17A1-207ENST00000488320 MBIPQ9NS73 344 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 ZNF70Q9UC06 446 aaPredicted RBP11.9□□□□□ -0.5
COL17A1-207ENST00000488320 STAP2Q9UGK3 403 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 SRRDQ9UH36 339 aa11.9□□□□□ -0.5
COL17A1-207ENST00000488320 AOX1Q06278 1338 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 OTOFQ9HC10 1997 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 BTBD19C9JJ37 291 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 SNAP23O00161 211 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 SOX1O00570 391 aaPredicted RBP11.89□□□□□ -0.51
COL17A1-207ENST00000488320 TAF5LO75529 589 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 IGKV5-2P06315 115 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 FKBP1AP62942 108 aaKnown RBP11.89□□□□□ -0.51
COL17A1-207ENST00000488320 SNAPC2Q13487 334 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms