RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GCC1Q96CN9 775 aa17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 ZBED3Q96IU2 234 aaPredicted RBP17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 MPHOSPH8Q99549 860 aa17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 ANKRD2Q9GZV1 360 aa17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 MYH16Q9H6N6 1097 aa17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 COL1A1P02452 1464 aaPredicted RBP17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 AOX1Q06278 1338 aa17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 SSC5DA1L4H1 1573 aa17.66■□□□□ 0.42
SQSTM1-208ENST00000485412 MANSC4A6NHS7 340 aaPredicted RBP17.65■□□□□ 0.42
SQSTM1-208ENST00000485412 KCNJ4P48050 445 aa17.65■□□□□ 0.42
SQSTM1-208ENST00000485412 LDLRAD1Q5T700 205 aa17.65■□□□□ 0.42
SQSTM1-208ENST00000485412 SLC10A4Q96EP9 437 aa17.65■□□□□ 0.42
SQSTM1-208ENST00000485412 CD209Q9NNX6 404 aa17.65■□□□□ 0.42
SQSTM1-208ENST00000485412 JAG2Q9Y219 1238 aa17.65■□□□□ 0.42
SQSTM1-208ENST00000485412 TRIM17Q9Y577 477 aa17.65■□□□□ 0.42
SQSTM1-208ENST00000485412 BEND3Q5T5X7 828 aa17.64■□□□□ 0.41
SQSTM1-208ENST00000485412 ZNF594Q96JF6 807 aaPredicted RBP17.64■□□□□ 0.41
SQSTM1-208ENST00000485412 LAMB1P07942 1786 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 HTTP42858 3142 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 OTOFQ9HC10 1997 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 ANKRD18BA2A2Z9 1011 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 INHBEP58166 350 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 DLGAP5Q15398 846 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 IFNL1Q8IU54 200 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 DEFB129Q9H1M3 183 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 CHMP3Q9Y3E7 222 aa17.63■□□□□ 0.41
SQSTM1-208ENST00000485412 ARAP2Q8WZ64 1704 aa17.62■□□□□ 0.41
SQSTM1-208ENST00000485412 PPP1R12BO60237 982 aaPredicted RBP17.62■□□□□ 0.41
SQSTM1-208ENST00000485412 WNK4Q96J92 1243 aa17.62■□□□□ 0.41
SQSTM1-208ENST00000485412 CENPFP49454 3210 aa17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 F8W031 263 aaPredicted RBP17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 ZBTB48P10074 688 aaPredicted RBP17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 NCBP3Q53F19 620 aaKnown RBP17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 INTS3Q68E01 1043 aaKnown RBP17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 LMBR1LQ6UX01 489 aa17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 OTOP1Q7RTM1 612 aa17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 WDR63Q8IWG1 891 aa17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 PPP2R3BQ9Y5P8 575 aa17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 RBBP6Q7Z6E9 1792 aaKnown RBP17.61■□□□□ 0.41
SQSTM1-208ENST00000485412 MYO1BO43795 1136 aa17.6■□□□□ 0.41
SQSTM1-208ENST00000485412 IFIT5Q13325 482 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-208ENST00000485412 MAP3K11Q16584 847 aa17.6■□□□□ 0.41
SQSTM1-208ENST00000485412 ERO1AQ96HE7 468 aa17.6■□□□□ 0.41
SQSTM1-208ENST00000485412 CLMNQ96JQ2 1002 aa17.6■□□□□ 0.41
SQSTM1-208ENST00000485412 CLRN2A0PK11 232 aa17.59■□□□□ 0.41
SQSTM1-208ENST00000485412 IGF2BP3O00425 579 aaKnown RBP eCLIP17.59■□□□□ 0.41
SQSTM1-208ENST00000485412 PLIN1O60240 522 aa17.59■□□□□ 0.41
SQSTM1-208ENST00000485412 SUPT20HL1Q3ZLR7 823 aa17.59■□□□□ 0.41
SQSTM1-208ENST00000485412 OTUD7BQ6GQQ9 843 aa17.59■□□□□ 0.41
SQSTM1-208ENST00000485412 C15orf52Q6ZUT6 534 aaKnown RBP17.59■□□□□ 0.41
SQSTM1-208ENST00000485412 VEZTQ9HBM0 779 aa17.59■□□□□ 0.41
SQSTM1-208ENST00000485412 POTEFA5A3E0 1075 aa17.58■□□□□ 0.4
SQSTM1-208ENST00000485412 GRM8O00222 908 aa17.58■□□□□ 0.4
SQSTM1-208ENST00000485412 IL1R1P14778 569 aa17.58■□□□□ 0.4
SQSTM1-208ENST00000485412 CFAP100Q494V2 611 aa17.58■□□□□ 0.4
SQSTM1-208ENST00000485412 MTMR14Q8NCE2 650 aa17.58■□□□□ 0.4
SQSTM1-208ENST00000485412 KAZALD1Q96I82 304 aa17.58■□□□□ 0.4
SQSTM1-208ENST00000485412 PRMT6Q96LA8 375 aaPredicted RBP17.58■□□□□ 0.4
SQSTM1-208ENST00000485412 KIAA0100Q14667 2235 aaKnown RBP17.57■□□□□ 0.4
SQSTM1-208ENST00000485412 UNCXA6NJT0 531 aa17.57■□□□□ 0.4
SQSTM1-208ENST00000485412 IREB2P48200 963 aaKnown RBP17.57■□□□□ 0.4
SQSTM1-208ENST00000485412 ZNF804AQ7Z570 1209 aa17.57■□□□□ 0.4
SQSTM1-208ENST00000485412 CD99L2Q8TCZ2 262 aa17.57■□□□□ 0.4
SQSTM1-208ENST00000485412 PUS3Q9BZE2 481 aaKnown RBP17.57■□□□□ 0.4
SQSTM1-208ENST00000485412 BRCA2P51587 3418 aa17.57■□□□□ 0.4
SQSTM1-208ENST00000485412 SPDYE2BA6NHP3 402 aa17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 SPDYE6P0CI01 402 aa17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 RBM5P52756 815 aaKnown RBP eCLIP17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 CRHR2Q13324 411 aa17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 HABP4Q5JVS0 413 aaKnown RBP17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 SLC4A10Q6U841 1118 aa17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 LDHAL6AQ6ZMR3 332 aa17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 SUCLG2Q96I99 432 aa17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 PTPN22Q9Y2R2 807 aa17.56■□□□□ 0.4
SQSTM1-208ENST00000485412 MKI67P46013 3256 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-208ENST00000485412 NBPF12Q5TAG4 269 aaPredicted RBP17.55■□□□□ 0.4
SQSTM1-208ENST00000485412 CDAN1Q8IWY9 1227 aa17.55■□□□□ 0.4
SQSTM1-208ENST00000485412 EFCC1Q9HA90 598 aa17.55■□□□□ 0.4
SQSTM1-208ENST00000485412 CNNM1Q9NRU3 951 aa17.55■□□□□ 0.4
SQSTM1-208ENST00000485412 ANP32CO43423 234 aa17.54■□□□□ 0.4
SQSTM1-208ENST00000485412 GYG1P46976 350 aa17.54■□□□□ 0.4
SQSTM1-208ENST00000485412 GRIK5Q16478 980 aa17.54■□□□□ 0.4
SQSTM1-208ENST00000485412 CCDC57Q2TAC2 916 aa17.54■□□□□ 0.4
SQSTM1-208ENST00000485412 ANKRD13AQ8IZ07 590 aa17.54■□□□□ 0.4
SQSTM1-208ENST00000485412 FAM9BQ8IZU0 186 aa17.54■□□□□ 0.4
SQSTM1-208ENST00000485412 USP2O75604 605 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-208ENST00000485412 NBPF7P0C2Y1 421 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-208ENST00000485412 GJA5P36382 358 aa17.53■□□□□ 0.4
SQSTM1-208ENST00000485412 FKBP1AP62942 108 aaKnown RBP17.53■□□□□ 0.4
SQSTM1-208ENST00000485412 SP3Q02447 781 aa17.53■□□□□ 0.4
SQSTM1-208ENST00000485412 TAF7LQ5H9L4 462 aa17.53■□□□□ 0.4
SQSTM1-208ENST00000485412 C9orf78Q9NZ63 289 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-208ENST00000485412 RASA3Q14644 834 aa17.52■□□□□ 0.4
SQSTM1-208ENST00000485412 ARMC5Q96C12 935 aa17.52■□□□□ 0.4
SQSTM1-208ENST00000485412 TMEM106CQ9BVX2 250 aa17.52■□□□□ 0.4
SQSTM1-208ENST00000485412 ELP3Q9H9T3 547 aa17.52■□□□□ 0.4
SQSTM1-208ENST00000485412 FAM205AQ6ZU69 1335 aa17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 ALDH1L1O75891 902 aa17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 EN2P19622 333 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 TNFAIP1Q13829 316 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms