RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SASH1O94885 1247 aa20.73■□□□□ 0.91
TRIM54-203ENST00000485306 HIBADHP31937 336 aaKnown RBP20.73■□□□□ 0.91
TRIM54-203ENST00000485306 FKBP1AP62942 108 aaKnown RBP20.73■□□□□ 0.91
TRIM54-203ENST00000485306 METTL24Q5JXM2 366 aa20.73■□□□□ 0.91
TRIM54-203ENST00000485306 FRAT1Q92837 279 aaPredicted RBP20.73■□□□□ 0.91
TRIM54-203ENST00000485306 TRIM27P14373 513 aa20.72■□□□□ 0.91
TRIM54-203ENST00000485306 LRRC24Q50LG9 513 aa20.72■□□□□ 0.91
TRIM54-203ENST00000485306 INTS3Q68E01 1043 aaKnown RBP20.72■□□□□ 0.91
TRIM54-203ENST00000485306 ATF7IPQ6VMQ6 1270 aa20.72■□□□□ 0.91
TRIM54-203ENST00000485306 VPS37DQ86XT2 251 aa20.72■□□□□ 0.91
TRIM54-203ENST00000485306 PDE8BO95263 885 aa20.71■□□□□ 0.91
TRIM54-203ENST00000485306 MS4A1P11836 297 aa20.71■□□□□ 0.91
TRIM54-203ENST00000485306 DLGAP5Q15398 846 aa20.71■□□□□ 0.91
TRIM54-203ENST00000485306 CAVIN4Q5BKX8 364 aa20.71■□□□□ 0.91
TRIM54-203ENST00000485306 ZKSCAN2Q63HK3 967 aa20.71■□□□□ 0.91
TRIM54-203ENST00000485306 RGMBQ6NW40 437 aa20.71■□□□□ 0.91
TRIM54-203ENST00000485306 FAM84BQ96KN1 310 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-203ENST00000485306 TNNQ9UQP3 1299 aa20.71■□□□□ 0.91
TRIM54-203ENST00000485306 AOC2O75106 756 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 GYG1P46976 350 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 FKBP1BP68106 108 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 NOGQ13253 232 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 TNS4Q8IZW8 715 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 TDRD7Q8NHU6 1098 aaKnown RBP20.7■□□□□ 0.9
TRIM54-203ENST00000485306 KLHDC4Q8TBB5 520 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 CCDC102AQ96A19 550 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 PRDM10Q9NQV6 1147 aa20.7■□□□□ 0.9
TRIM54-203ENST00000485306 NF2P35240 595 aa20.69■□□□□ 0.9
TRIM54-203ENST00000485306 CERS5Q8N5B7 392 aa20.69■□□□□ 0.9
TRIM54-203ENST00000485306 MEIS3Q99687 375 aa20.69■□□□□ 0.9
TRIM54-203ENST00000485306 FAM205AQ6ZU69 1335 aa20.69■□□□□ 0.9
TRIM54-203ENST00000485306 F8W031 263 aaPredicted RBP20.68■□□□□ 0.9
TRIM54-203ENST00000485306 EYA2O00167 538 aa20.68■□□□□ 0.9
TRIM54-203ENST00000485306 MYO1BO43795 1136 aa20.68■□□□□ 0.9
TRIM54-203ENST00000485306 FRAT2O75474 233 aaPredicted RBP20.68■□□□□ 0.9
TRIM54-203ENST00000485306 ZNF157P51786 506 aaPredicted RBP20.68■□□□□ 0.9
TRIM54-203ENST00000485306 APOBEC3FQ8IUX4 373 aaKnown RBP20.68■□□□□ 0.9
TRIM54-203ENST00000485306 MTMR14Q8NCE2 650 aa20.68■□□□□ 0.9
TRIM54-203ENST00000485306 THSD7BQ9C0I4 1608 aa20.67■□□□□ 0.9
TRIM54-203ENST00000485306 IFIT1P09914 478 aaKnown RBP20.67■□□□□ 0.9
TRIM54-203ENST00000485306 RRP1P56182 461 aaKnown RBP20.67■□□□□ 0.9
TRIM54-203ENST00000485306 FBXO33Q7Z6M2 555 aa20.67■□□□□ 0.9
TRIM54-203ENST00000485306 VGLL2Q8N8G2 317 aa20.67■□□□□ 0.9
TRIM54-203ENST00000485306 CLUAP1Q96AJ1 413 aa20.67■□□□□ 0.9
TRIM54-203ENST00000485306 FBXO3Q9UK99 471 aa20.67■□□□□ 0.9
TRIM54-203ENST00000485306 JAG2Q9Y219 1238 aa20.67■□□□□ 0.9
TRIM54-203ENST00000485306 LRRFIP2Q9Y608 721 aaKnown RBP20.67■□□□□ 0.9
TRIM54-203ENST00000485306 CA12O43570 354 aa20.66■□□□□ 0.9
TRIM54-203ENST00000485306 GNAI3P08754 354 aa20.66■□□□□ 0.9
TRIM54-203ENST00000485306 RFX5P48382 616 aaPredicted RBP20.66■□□□□ 0.9
TRIM54-203ENST00000485306 RBM5P52756 815 aaKnown RBP eCLIP20.66■□□□□ 0.9
TRIM54-203ENST00000485306 LBX1P52954 281 aa20.66■□□□□ 0.9
TRIM54-203ENST00000485306 PTPN12Q05209 780 aaKnown RBP20.66■□□□□ 0.9
TRIM54-203ENST00000485306 PUM3Q15397 648 aaKnown RBP20.66■□□□□ 0.9
TRIM54-203ENST00000485306 CFAP100Q494V2 611 aa20.66■□□□□ 0.9
TRIM54-203ENST00000485306 MFSD14BQ5SR56 506 aa20.66■□□□□ 0.9
TRIM54-203ENST00000485306 ZBED3Q96IU2 234 aaPredicted RBP20.66■□□□□ 0.9
TRIM54-203ENST00000485306 SCAF8Q9UPN6 1271 aaKnown RBP20.66■□□□□ 0.9
TRIM54-203ENST00000485306 SUPT16HQ9Y5B9 1047 aaKnown RBP20.66■□□□□ 0.9
TRIM54-203ENST00000485306 PDE3AQ14432 1141 aa20.65■□□□□ 0.9
TRIM54-203ENST00000485306 HSPA8P11142 646 aaKnown RBP20.64■□□□□ 0.89
TRIM54-203ENST00000485306 TTLL12Q14166 644 aaPredicted RBP20.64■□□□□ 0.89
TRIM54-203ENST00000485306 PRAMEF18Q5VWM3 479 aa20.64■□□□□ 0.89
TRIM54-203ENST00000485306 PPP4R3CPQ6ZMV5 832 aa20.64■□□□□ 0.89
TRIM54-203ENST00000485306 TBC1D22AQ8WUA7 517 aa20.64■□□□□ 0.89
TRIM54-203ENST00000485306 CIAO1O76071 339 aa20.63■□□□□ 0.89
TRIM54-203ENST00000485306 SLC5A1P13866 664 aa20.63■□□□□ 0.89
TRIM54-203ENST00000485306 TMEM57Q8N5G2 664 aa20.63■□□□□ 0.89
TRIM54-203ENST00000485306 LPIN2Q92539 896 aa20.63■□□□□ 0.89
TRIM54-203ENST00000485306 CEP126Q9P2H0 1117 aa20.63■□□□□ 0.89
TRIM54-203ENST00000485306 TTF2Q9UNY4 1162 aaKnown RBP20.63■□□□□ 0.89
TRIM54-203ENST00000485306 SPDYE2BA6NHP3 402 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 FAM155AB1AL88 458 aaPredicted RBP20.62■□□□□ 0.89
TRIM54-203ENST00000485306 SPDYE6P0CI01 402 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 FGFR2P21802 821 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 BCAMP50895 628 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 FTSJ3Q8IY81 847 aaKnown RBP20.62■□□□□ 0.89
TRIM54-203ENST00000485306 DZIP1LQ8IYY4 767 aaKnown RBP20.62■□□□□ 0.89
TRIM54-203ENST00000485306 PRMT6Q96LA8 375 aaPredicted RBP20.62■□□□□ 0.89
TRIM54-203ENST00000485306 SIL1Q9H173 461 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 DEFB129Q9H1M3 183 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 SERPINA10Q9UK55 444 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 IQSEC3Q9UPP2 1182 aaPredicted RBP20.62■□□□□ 0.89
TRIM54-203ENST00000485306 PAPPA2Q9BXP8 1791 aa20.62■□□□□ 0.89
TRIM54-203ENST00000485306 IL15P40933 162 aaPredicted RBP20.61■□□□□ 0.89
TRIM54-203ENST00000485306 CHAF1AQ13111 956 aaPredicted RBP20.61■□□□□ 0.89
TRIM54-203ENST00000485306 ATG9AQ7Z3C6 839 aa20.61■□□□□ 0.89
TRIM54-203ENST00000485306 ARMC9Q7Z3E5 817 aa20.61■□□□□ 0.89
TRIM54-203ENST00000485306 REM2Q8IYK8 340 aaPredicted RBP20.61■□□□□ 0.89
TRIM54-203ENST00000485306 PPP2R3BQ9Y5P8 575 aa20.61■□□□□ 0.89
TRIM54-203ENST00000485306 ECM29Q5VYK3 1845 aa20.6■□□□□ 0.89
TRIM54-203ENST00000485306 UBE2Q2LH0YL09 131 aa20.6■□□□□ 0.89
TRIM54-203ENST00000485306 SLC10A3P09131 477 aa20.6■□□□□ 0.89
TRIM54-203ENST00000485306 KIF23Q02241 960 aaPredicted RBP20.6■□□□□ 0.89
TRIM54-203ENST00000485306 COL1A1P02452 1464 aaPredicted RBP20.6■□□□□ 0.89
TRIM54-203ENST00000485306 ZIC5Q96T25 663 aa20.59■□□□□ 0.89
TRIM54-203ENST00000485306 VEZTQ9HBM0 779 aa20.59■□□□□ 0.89
TRIM54-203ENST00000485306 COPRSQ9NQ92 184 aa20.59■□□□□ 0.89
TRIM54-203ENST00000485306 CLRN2A0PK11 232 aa20.58■□□□□ 0.89
TRIM54-203ENST00000485306 SRGAP3O43295 1099 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms